AMCG00004210 (fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122)


Basic Information

Item Value
gene id AMCG00004210
gene name fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 37832623 ~ 37847720 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004210
GTTTGCTGGAATGGGTAATCTTCTAAAAGTCCTAACAAGGGAAATAGAAAACTATCCTCATTTTTTCCTGGACTTTGAAAGTAAaaaCCAAATGGGGAATCTGTTAAAAGTTCTCACTTGCACAGAGCTTGATCAGGGGCCAAACTTTTTCCTTGACTTTGAAAATGCACAACCTACAGAGTGTGAAAAGGAAGTGTGGAACCAGGTCAATGCCGTGCTGCAGGACTCCGAGAGTATACTCTCTGGCCTGCAGGCGTACAAGGGAGCTGGGCAGGAGATAAGAGAAGCAATACAAAATCCAAATGACTATCACCTCCAGGAGCAAGCGTGGAACTCCGTCTGTCCGCTTGTCATACGTCTCAAGAGGTTCTATGAATTCTCTTTAAGGCTAGAGAAAGCACTGCAGAGCCTCCTGGAGTCCCTGACATGTCCGCCCTACACTCCGACACAGCACCTGGAGAAAGAGCAGGCGCTGGCCAAGCAGTTTGCGGAGATCCTTCACTTTACACTCCGGTTTGATGAGCTCAAGATGAGAAATCCAGCCATTCAGAATGACTTCAGTTATTACAGGCGGACAATAAGTCGAAACAGgataaataacatgaatTTAGACATTGAAAACGAAGTCAACAATGAAATGGCGAACAGAATGTCACTGTTTTACGCGGAGGCCACGCCGATGTTGAAAACGCTCAGTACTGCCACAACAAACTTTGTATCTGAGAACAAAACTCTGCCTCTGGAAAACACAACGGACTGCTTAAGCACTATGGCGAGTGTATGTAAAGTAATGCTGGAGACGCCGGATTACACGAGTCGATTCAACAGCGAGGACACCCTGCTGTTCTGCATGCGAGTTATGGTTGGAGTCATAATCTTGTACGATCATGTGCATCCAGCTGGGGCCTTTACAAAGGCTTCAAAAATTGATAAAGTGAAGGAA
>TU7999
tacatttttatatttttcaggtTCACCACAAAACACCTGAATGATGAGACAACTCCAAAAACTATTCGTGCTATGcttcagtaacatttttttttatatgaagagGATCTATGTTCTGACCTCAGAAGATGTATatgtttacataatttaaaagacTTGATGTTAATActtgtgtgtatttacatagcCATTCCCTCCACATTAATAAAACTTATAGAAAATGTACCTTTATTCTAAAACCAATTGCCAATACTATTATTTGTTGaagcacaaaataattataccTTACAGCCTTATAAACTGAAACATGCAAAACTGCTTGGcatgcaacttttttttttttttttctaatgttaTACCAATTATAAAATGAAGTTTTTCAGAAGAGTGAATTATTTTCTGTGGTTTTCTTATATTCAGGGAACTTCAGCCAAGGTAGCAAGGGTAGTGTCTTACATATTGATTTTTTCTTGGTGAGTTTTGATGTTCGTCTGGTTTTCTTCGTGGAACATAAAACTGATGGGAAAGGCATGATTGATCAATACAAAAGAAATGACCAAAATGGCCCCCAGTCCTGAAGTTAACCAGCAAATCACCTGGGTGTCCCAGTTCACATGACTGGAGTCACAGGAAGTACCAAGTTGGTCATAGTGTTTGCCTTGGTGGTGACTGGAAACTGTCCGAAGCTGATTTGCCTCTCTACTACCGAGTCCTGCTAAGAAGGAAAACGGGTGAAAATCGGAAAGCTTGCCTGGGGAAAAATATTCAGGTTTGCCAACTCtgccaaaataaatgtgcaaatgttttttcttaaacaaaggGCATGTAAATATCCACACATTGTGTTCCATTTTAAACTATTTGGTGATGGATCTAGGTTTTATTAACGTTAGCAAGCAATATTGTTGTTTcttgctttgtgtattgctgaATTGAACTTTTCTGAAGATTCGAGCTGCAGagattttaaagcacatttgaaacattttcaatatcGAAGAACAGTAACATTTACCATTTTCCTTTGCTAGGGTGGAAACCTATTTGCTACTGTAAGCATTTCTGCCAACTATACatgatttacaaattattttacagtaccTTTAATCTCAAAGGTGCGATTCCCCATACAGTTTCATGCATTGTGTGTTGCTGGAGTTAAATGTCTGTATTCTTATTTGTGCATAaggatgtgtgtattttttgctTGGCAAGGAAGTTGGGTAGCACACATTGAAATTTGATTGCGATATCAGGTTAACTAGAAGCATTTCTCTGGCCCTGATATGAACCTGtgtacctttttatttcatGCATTGTTCTCTCTAGCATTTTCTTTGAATAAATGTTGACCAAAGGGGCATTATAGATATTGTAATTTCTGAGTTAGTTTTACTTGTTTATACAAGAATGAGTGTCTTGATATGGTACAATAGTGACATCAGTATTAaccactggaaaaataaaaaattaagataTGTGATTTAGTCTTTTCAGAAGTATTGACGTTTTTATAAGCATTTCTGGAACATTGATGGGTTTGTTCAAGTCTGaattttgctttaaatgaaCGTGCTGAGATTATGAAAGCTAAGGCATTTCCAGGTAGTATCGGCCATTCACACTACAGAGTTTATTTGCTGTAACCATACTACGCAATTCTTTGTATGTTTGCAGTTTGACTATGCCATTATGCTGTGCTCTATCAAACCAATGGGGGTGGCTTCAACAATGTCTTAATTTTGCAGTGTAGCACAAATTCACAGCCAACGGCAGCGTTTCTTAGTTTAGTTTTCAGTTTCCAATGAAGGCATTAATACTCTCCGTGTTCAATCAGAAACACTCTCACTCTGATTTGTTCCcgatttttgaaaataattataggGATAGTTTAAATTTTTTCCATGATCTGCaatgacaattaattaattgtaagtCACATGTCTCTCCCTTCTTCAGAGAAATTACGGTGTAGCAGCTTGCACCCAATCCCCACAGCTGGGTCAGGGTGAAGTTTGTGCCATTACTCCTCCAGAAAGTGAAGGAATGAAAAGTAGGAATAGTCCTATTCAATTGCATAGGTTTATTATTTACTGGAGGAACACCATAACAAATAAATGCTGTATTGTAAATGGCCTTTTACAAAGACAAACATTAAAAGTTAACTACTGAATTAAAGTGACTAGTGTGGAGCACATATATTAAgaagaattaaatatataaaataccaaTGTTCTTCCAAATGTCAGTATTGAATGAAATATTTAAGTGATGCCTTTCTAAAGCCTAAAGTGTGCAAAAAGTGCTAATTGCCAgctatattaaatattcataaaatgtttttaactgacagtacagttttatttgttgtatagTTTGAGAAACTGTCCAGCTTcttgttggttttgcttttgtattgtatattatatggATGtgtgaagtgaaaataaaaactggtaCATTTTGTTGACTGGGATCTGTTTATCTTTGTCCGTTTATTGAAATGCGgctattatttttataagaaaataaaaaatggcacTGCGTCTTCATCTATTTCATGTCCACCTGGGACAGTCATGGCCACTGGTGGTCCTGGAAACACACCTCGAGAACCACTGATCTCCATGCCGGCGCCATGCGAAACGCAGCAGTTCTTGCCTTTTAACATGCATTCCAAGGAATCTACAATCAACTGCTCTGGAACACTGCAGCTAGTTTGTTTCTGAAAGTCATGCATTTCAACTTATTCCTGAGGTTTGGGGTTTGTGGTTTTCAGCAGCtaaaggaaaatgtgaaaatgagtCATCCAAACAGTCTGTGCCTCTCTCCTGTCATCGTGTGTTTACACTTGAACAGTCTGTGCCTCTCTCCTGTCATCGCATGTTTACATTTGAACAGTTCTTATTTATTGTGTGAGTTGCACATTTCCTTTATATGTAAAAAGGTCCAGTGTTGCTACTTTACAAATAGATGCATCCAATGTAATAAATCTT

Function

symbol description
fam49a Acts upstream of or within regulation of T cell differentiation and thymus development. Predicted to be located in membrane. Is expressed in several structures, including adaxial cell; digestive system; musculature system; sensory system; and trunk. Orthologous to human CYRIA (CYFIP related Rac1 interactor A).
znf395 Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in positive regulation of transcription by RNA polymerase II. Located in cytosol and nuclear speck.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004210 False 943 mRNA 0.46 10 37832623 37846771
TU7999 True 2996 lncRNA 0.46 2 37844509 37847720

Neighbor

gene id symbol gene type direction distance location
AMCG00004208 NA coding upstream 225401 37570803 ~ 37607222 (+)
AMCG00004209 SF3B6,sf3b6,pm14 coding upstream 262357 37567333 ~ 37570266 (+)
AMCG00004198 NA coding upstream 286835 37529762 ~ 37545788 (+)
AMCG00004205 NA coding upstream 346991 37478830 ~ 37485632 (+)
AMCG00004206 NA coding upstream 353936 37476289 ~ 37478687 (+)
AMCG00004215 LOC106593169,LOC107726627,LOC107690899 coding downstream 241143 38088863 ~ 38186137 (+)
AMCG00004216 NA coding downstream 365662 38213382 ~ 38220095 (+)
AMCG00004214 NA coding downstream 377836 38225556 ~ 38226811 (+)
AMCG00004218 NA coding downstream 883788 38731508 ~ 38743566 (+)
AMCG00004222 NA coding downstream 978101 38825821 ~ 38833968 (+)
G6471 NA non-coding upstream 316125 37514882 ~ 37516498 (+)
G6428 NA non-coding upstream 488178 37344061 ~ 37344445 (+)
G6427 NA non-coding upstream 491609 37337526 ~ 37341014 (+)
G6421 NA non-coding upstream 514477 37315645 ~ 37318146 (+)
G6405 NA non-coding upstream 567119 37158176 ~ 37265504 (+)
G6573 NA non-coding downstream 407509 38255229 ~ 38255483 (+)
G6585 NA non-coding downstream 568878 38416598 ~ 38418776 (+)
G6586 NA non-coding downstream 618676 38466396 ~ 38466643 (+)
G6598 NA non-coding downstream 768524 38616244 ~ 38616464 (+)
G6617 NA non-coding downstream 902194 38749914 ~ 38756252 (+)
G6369 NA other upstream 832465 36999357 ~ 37000158 (+)
G6328 NA other upstream 940877 36861547 ~ 36891746 (+)
G6314 NA other upstream 1058100 36774001 ~ 36774523 (+)
AMCG00004179 ptrhd1,LOC103399259 other upstream 1134738 36687630 ~ 36697885 (+)
AMCG00004167 NA other upstream 1554389 36261788 ~ 36278234 (+)
AMCG00004257 dusp10,LOC106607590 other downstream 2478690 40326410 ~ 40341235 (+)
G7094 NA other downstream 3611856 41459576 ~ 41507231 (+)
AMCG00004304 NA other downstream 4362710 42210430 ~ 42216362 (+)
G7329 fabp7,LOC108247051,LOC104945778 other downstream 4841059 42688779 ~ 42691109 (+)
AMCG00004355 hyou1,LOC100380749 other downstream 6770465 44618185 ~ 44640732 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_017488 fam49a coding NC_007131.7 CM002904.2 35255403 ~ 35298023 (+)
grasscarp (Ctenopharyngodon idella) G468718 NA non-coding CI01000325 null 10386043 ~ 10388152 (-)