AMCG00004215 (LOC106593169,LOC107726627,LOC107690899)


Basic Information

Item Value
gene id AMCG00004215
gene name LOC106593169,LOC107726627,LOC107690899
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 38088863 ~ 38186137 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004215
ATGTCCACCGTAAACATGGCTGATTGTAGCAGTgtagaaaatgaagaagaaaatattctCTACGATTTACTGATAAATACTGAATGGCCAGCGGAGACAGATACTCAGCTGAGAGGGAGCAAAGAGCACAGTTCCTCACTGGTTGCAAAGGCAGTGACGGGTCCTTTTAAGTTTATTCTACACTATTTGTGGTACAGCCCTTCAAGTTCTTCTTTACCTCCAGGACTAGTTCAACTTGTCAGTAAACAAATTAACTGGCAGCTTGTTCTTGCAAGcaATGGAAAGTTGTTGGCTGTTGTGCAAGACCAGTGTGTGGAAATcagATCTGCAAGAGATGATTTTGGTTCTGTCATTGGGAAATGTCAagTACCTAAAGACCCTAATCCACAGTGGAGGAGAGTAGTGTGGAGCCATGATTGCACATTACTTGCATACACAGAAAGCACTGGGACAGTGAGAGTGTTTGACTTGATGGGGAGCGAACTCTTTGTCATTCCTCCGGCGGCCACTTTTCCAGGCGACTTCAGCTACGCCGTGGCAGGCCTCATTTTTCTGGAGTACACCGCCAGTGCCCAGTGGTCAGCAGAGTTGCTAGTCATTAATTATCGAGGACACCTTAAAAGTTACCTTGTCAGtgttgGAACAAATCAGAGTTACCAGGAAAACCATACTTTCAACTTTGGTACACATTATTCTCATGGAATTACAACAGCAATATACCATCCTGGACATAGGTTGCTGCTGGTTGGAGGCTGTGAAGCCAGTGATAATGAAGCATCGAAGGCAACTCGATGTGGTCTCACAGCCTGGAGAGCTCTGTCGGGCTCCCCTTATTATAAACAAGTCACCAGCTATGAGGATGATGTGGGTTATACACAACGAAGAGGATTCTTAAGAATGATTAACTGGAGATTGTTTACAAGGCAAAGGAATGAGCAGGATGGTATTTTCAAGATGAGTCTGTCTCCTGATGGGATCCTTTTGGCAGCAATACATTTCTCAGGACAGCTAACTTTTTGGGAAATCCCTTCTTTTAGACAAAGTGCTGTATGGAGCCAGGACTCTCAGcCTGGATTTGATGAGATCAACCCAGAATGGAAAAATTCacttgagaaaagaaaaaaaataaaagACAAGGAGTACTATTTCCCTCTGGTGGATGTGAACTGGTGGGCTGAGAGTGCAGTCATCCTTGCGCGATGCTCTGGCTCCCTGACCGTGTCTTCTATTAAAACCCTGAAGAACCTCCTGGGCAAGTCATGCGAGTGGTTTGAGCCTTCGCCACAGGTGACGGCCGCGCACGACGGAGGCTTCCTCAGTCTTGAGTGTGAGATCAAGCTGGCTCAGAAAAGGCCTCGTTTGGAAAGCAGCCAGACGGAGGAAGAGGAGGGTGATGAGGACTCTGATTCAGATGACGAGTCTTCTGCCAAGGCCCGCTATTTTGGTTATGTGAAGCAGGGCCTGTATTATGTGACAGAGATGGAGCGATTTGCACCCCCACGTAAACGTCCTCGAACCATAACCAAGAATTATCGTTTGGTGAGCCTGAGATCAACTACGCCAGAAGAGCTGTACCAGAGAAAGATTGACAATGAGGAATATGGAGAGGCCCTGTCTTTGGCAAAAGCCTATGGCCTGGACTCAGACCTTGTCTATCAGAGGCAGTGGAGGAAATCAACAAGTAAAATTAAGAAGCGCTCCTGGGTGCTGCACGAGTGTGTGGAGCGAGTACCAGAGAACGTGGATGCAGCGAAGGAGCTCCTTCAGTATGGACTGAAAGGCACGGATTTGGAGGCTTTGATCGCTATAGGAAATGGAGAGGATGGTGGAAGATTCATAATGCCAGGTGACATAGACATTGAAGAGGTGCCGTATGAAGACTTCCTGTCACCTACCGAGgaactgcagagaaaaaaagaagTAGAAGCTAAAAAACGACAAGAACTTCTCAAGAAAGTGGACTTCAGCAGtctGACTCTGGAACAGAAGGAGCTTTGCAGAAGCCGTCTGAAACTCTTGTGCTATCTAGACCGCTTAGCGACATATGAGGAAATCCTTGGAGGACCGCACGCTGCAGAACAGAGATATAATGCAGAGTTCTTCAAGAGGTTCAGAAATCAGAACATTGTGCTGTCAGCAAGAACTTACGCCAGGGAGAGCAATGTACAAGCATTGGAAATCTTATTTACTTATCATGGGTCAGAACTTCTTCAACATTACCTAGCCATTCTGTCCAGCTTTCCAGAGACTACGTCCCCACATGAATATATGAATCTCCTTCCAGAAGCGTGCAATGATGAAGATGGTAATCTAGTGATGATACCATGGAATGAACAAAGACATCGAGACAGAGACTGGTGTGAGGAACCAGAATGCAGAGCAATTTTGGAACCAAATCCAAATGATGAAGCTGAATTCCTTTATCAAGAGAACCCCGGATTATTGAAGTACCAAACTGCTGAGCTCTCAGTCGAGCTCCTGACTGACTGGTACCTGAAACGGGCTGAGGACATTGATAGTTTTTCCAGACAGGTGGACTGTGCCTTGTCCTTGGTGCGACtggggaaggagagaaaaatCCCAGGCCTTGAGCTCCTCTGTGACGACTTGGTTACCTTAGAGACACTGGTGTATGAAGCTGCTTGTGACCTGACCTTAACACTGAAGGATCTGCAACAGATGAAAAACATTGACAAACTGAGGCTATTAATGAAGAATTCTTCTAAAGAAAGGTACGTGAAGGACGCATACCAATGGATGGTCCCATTCCTCCATCGATGCGAGAGCCAGGAAGCAGGATCGGCCAACGCACTTCTGCGGGAATACTTGATCACTCTTTCAAAGGAGGATCTCAGCTTCCCTTTGCAGATATTTCAGCAGTCTAAACCtaatAAACACAGTTTCCTCTCCTTACAGTGTCAGCAGAAAATTATTGGAGATCATGACCAATTAATGTCGATAGCCCTCGAGTGCATCTATACCTGTGAAAGGGACAATCAGCTTTCTCTTTGTTATGATGTGCTAGAATGTCTTCCACAGAGAGGCTTCGGAGCTGAAACAAACCTGACCAAAATACTTCATGACAAGGTGGATCAATTGGAGAAACACCTCAGTGTTGCTGAGAATCTGGAGAAGAATGGACTACAAAAACCCATTTCATttgtgaggaacagccaaaccaACCGTGAAGAAGCACATCAACTGATGGTGAAGCTCACCCGGCACACTGGGCGCAAATTGCACAAGCTGTCCAAGAACCTCTATGCACTGCTGTGTTGGTTTACTCGTAGGAATCCACCTGTGAGTGAAAATCATTGGAAAGGGCTGCTCCAGGACTTGCTGGACATGCAGAACATTGTATATACATGCCTGGAACAAGACGCATGCTATCAGATATTTACTGAAAGCCTGCTGTGCTCCAGCCGCCTGGAAAATATCCGCCTGGCTGGGCAGATGATGCACTGCAGCGCCGTATCGCAGGACACGCCCGTTAGCGTGGCCTTCCGAGGGAAAGCACACTCCAAGGTCAGCTACACGAAGAGCATTGAGCTGGTCCTGGCAGCAGCTAGGGAATACTTCAATTCCTCCACATCTCTGACTGACAACTGCATGCACTTGGCcagGTGCTGCTTACAGCTGATCTCAGATTGCCCTCCTATCATACAAGAAGAGCTTGATTTGATCAGCGCACTGAGCCAGCTGGAGGAGTTTGAAGTGAAGATCCTCCCGTTACAagTGCGTCTGCGATCAGACCGTCTCACCCTTATTGAAGAATGCATCAGTCAATGCCCAACGGCTTACAAGCAGTCCACAAAGCTCCTGGGACTTGCAGATCTGCTGAGGGTTTCAGGAGATGACTGCGTGAAGAGAAAGGGCCAGGTGCTAACTCTGCTGGCAGAGCAGGCTCTTCAGTGGCTGGATTACAAAACCTGCAATATCCATTGCCAAGAGCTCATGGCAGCAGGTTATCGTGACGGTTGGCAGGTCTGCAGCCAGCTGGGACAGTGTGAGAGTTACCAGGACCTGGGCACCCGGCAGGAGCTCACCGCCTTTGCCCTCACACACTGTCCTCCCGGTGTCATCCAGAGTCTGCTGGCTGCCAGCAGCTCATTACAAACACAGATTCTCTACCAAGCAGTGAATTACCAGATTGGTTCTAATAATTGTGGAACAGGTTTGGAAGCCAAAGATTCACTACAGGCTGATGCTAAAGCTTCTAGTACCAGACAGTCTGCAGACCTGCTACATCGAACCACAGCTAAAACCATAGAGGTCCTCTCTAACCCAAGCATGACAACCAAAGCTGTTCTGCATGCTGTCAGTGATTCACAGTGGTGGAAGAAGTCAGTCAGTTATCTGCGACCTCTACATGGTCAAGGACTGGGTTCTGCACTAAAGGGCATGGCTGGAGAAAATGCAGATATGGAAAAACAAGGCTGCAGCCCTTTCTATGAGAATCTTTTGGATAATCCCTACACTAACAAAAGTGAAGTAACTTACACATCATATGAGCACAGCCCATTGGAAAACTTTGCAGAAGTTTTACTACGGACAGGAAAACTAGCTGAAACTAAGAGTGAAGGCCAAAATGTGTTTCCAACAACAGAA

Function

NR:

description
PREDICTED: neuroblastoma-amplified sequence-like

GO:

id name namespace
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process
GO:0009790 embryo development biological_process

KEGG:

id description
K20473 NBAS; neuroblastoma-amplified sequence

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004215 True 4608 mRNA 0.47 38 38088863 38186137

Neighbor

gene id symbol gene type direction distance location
AMCG00004208 NA coding upstream 481641 37570803 ~ 37607222 (+)
AMCG00004209 SF3B6,sf3b6,pm14 coding upstream 518597 37567333 ~ 37570266 (+)
AMCG00004198 NA coding upstream 543075 37529762 ~ 37545788 (+)
AMCG00004205 NA coding upstream 603231 37478830 ~ 37485632 (+)
AMCG00004206 NA coding upstream 610176 37476289 ~ 37478687 (+)
AMCG00004216 NA coding downstream 27245 38213382 ~ 38220095 (+)
AMCG00004214 NA coding downstream 39419 38225556 ~ 38226811 (+)
AMCG00004218 NA coding downstream 545371 38731508 ~ 38743566 (+)
AMCG00004222 NA coding downstream 639684 38825821 ~ 38833968 (+)
AMCG00004223 mcm8,LOC107738559 coding downstream 653879 38840016 ~ 38850011 (+)
G6471 NA non-coding upstream 572365 37514882 ~ 37516498 (+)
G6428 NA non-coding upstream 744418 37344061 ~ 37344445 (+)
G6427 NA non-coding upstream 747849 37337526 ~ 37341014 (+)
G6421 NA non-coding upstream 770717 37315645 ~ 37318146 (+)
G6405 NA non-coding upstream 823359 37158176 ~ 37265504 (+)
G6573 NA non-coding downstream 69092 38255229 ~ 38255483 (+)
G6585 NA non-coding downstream 230461 38416598 ~ 38418776 (+)
G6586 NA non-coding downstream 280259 38466396 ~ 38466643 (+)
G6598 NA non-coding downstream 430107 38616244 ~ 38616464 (+)
G6617 NA non-coding downstream 563777 38749914 ~ 38756252 (+)
AMCG00004210 fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 other upstream 241143 37832623 ~ 37847720 (+)
G6369 NA other upstream 1088705 36999357 ~ 37000158 (+)
G6328 NA other upstream 1197117 36861547 ~ 36891746 (+)
G6314 NA other upstream 1314340 36774001 ~ 36774523 (+)
AMCG00004179 ptrhd1,LOC103399259 other upstream 1390978 36687630 ~ 36697885 (+)
AMCG00004257 dusp10,LOC106607590 other downstream 2140273 40326410 ~ 40341235 (+)
G7094 NA other downstream 3273439 41459576 ~ 41507231 (+)
AMCG00004304 NA other downstream 4024293 42210430 ~ 42216362 (+)
G7329 fabp7,LOC108247051,LOC104945778 other downstream 4502642 42688779 ~ 42691109 (+)
AMCG00004355 hyou1,LOC100380749 other downstream 6432048 44618185 ~ 44640732 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000325_08919961_09083730 NBAS coding CI01000325 null 8919961 ~ 9083730 (-)