Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00004216 |
| gene name | NA |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030121.1 |
| NCBI id | CM030121.1 |
| chromosome length | 57050121 |
| location | 38213382 ~ 38220095 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0000184 | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | biological_process |
| GO:0009790 | embryo development | biological_process |
| id | description |
|---|---|
| K20473 | NBAS; neuroblastoma-amplified sequence |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00004216 | True | 516 | mRNA | 0.46 | 3 | 38213382 | 38220095 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00004215 | LOC106593169,LOC107726627,LOC107690899 | coding | upstream | 27245 | 38088863 ~ 38186137 (+) |
| AMCG00004208 | NA | coding | upstream | 606160 | 37570803 ~ 37607222 (+) |
| AMCG00004209 | SF3B6,sf3b6,pm14 | coding | upstream | 643116 | 37567333 ~ 37570266 (+) |
| AMCG00004198 | NA | coding | upstream | 667594 | 37529762 ~ 37545788 (+) |
| AMCG00004205 | NA | coding | upstream | 727750 | 37478830 ~ 37485632 (+) |
| AMCG00004214 | NA | coding | downstream | 5461 | 38225556 ~ 38226811 (+) |
| AMCG00004218 | NA | coding | downstream | 511413 | 38731508 ~ 38743566 (+) |
| AMCG00004222 | NA | coding | downstream | 605726 | 38825821 ~ 38833968 (+) |
| AMCG00004223 | mcm8,LOC107738559 | coding | downstream | 619921 | 38840016 ~ 38850011 (+) |
| AMCG00004224 | crls1,LOC107663140,LOC107737905,LOC107678734,LOC103476593 | coding | downstream | 630694 | 38850789 ~ 38855317 (+) |
| G6471 | NA | non-coding | upstream | 696884 | 37514882 ~ 37516498 (+) |
| G6428 | NA | non-coding | upstream | 868937 | 37344061 ~ 37344445 (+) |
| G6427 | NA | non-coding | upstream | 872368 | 37337526 ~ 37341014 (+) |
| G6421 | NA | non-coding | upstream | 895236 | 37315645 ~ 37318146 (+) |
| G6405 | NA | non-coding | upstream | 947878 | 37158176 ~ 37265504 (+) |
| G6573 | NA | non-coding | downstream | 35134 | 38255229 ~ 38255483 (+) |
| G6585 | NA | non-coding | downstream | 196503 | 38416598 ~ 38418776 (+) |
| G6586 | NA | non-coding | downstream | 246301 | 38466396 ~ 38466643 (+) |
| G6598 | NA | non-coding | downstream | 396149 | 38616244 ~ 38616464 (+) |
| G6617 | NA | non-coding | downstream | 529819 | 38749914 ~ 38756252 (+) |
| AMCG00004210 | fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 | other | upstream | 365662 | 37832623 ~ 37847720 (+) |
| G6369 | NA | other | upstream | 1213224 | 36999357 ~ 37000158 (+) |
| G6328 | NA | other | upstream | 1321636 | 36861547 ~ 36891746 (+) |
| G6314 | NA | other | upstream | 1438859 | 36774001 ~ 36774523 (+) |
| AMCG00004179 | ptrhd1,LOC103399259 | other | upstream | 1515497 | 36687630 ~ 36697885 (+) |
| AMCG00004257 | dusp10,LOC106607590 | other | downstream | 2106315 | 40326410 ~ 40341235 (+) |
| G7094 | NA | other | downstream | 3239481 | 41459576 ~ 41507231 (+) |
| AMCG00004304 | NA | other | downstream | 3990335 | 42210430 ~ 42216362 (+) |
| G7329 | fabp7,LOC108247051,LOC104945778 | other | downstream | 4468684 | 42688779 ~ 42691109 (+) |
| AMCG00004355 | hyou1,LOC100380749 | other | downstream | 6398090 | 44618185 ~ 44640732 (+) |
