AMCG00004387 (msantd2,LOC107588693)


Basic Information

Item Value
gene id AMCG00004387
gene name msantd2,LOC107588693
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 46180538 ~ 46187407 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004387
atgcaccagaGTCAGACCCCCAAGACGTCAGcgcccctccccctcccccttagCAACAGAACCAAGATGGCGGCGCCCAGTAACGCTGATCATTCGCCCGAAATATCGATGCCATTAAAGATCCCGAAAACCGAAGTCCCCTCCCCGGAATCGGGAGATCTGAGCGACGGCAACCAGTACCACTCGGACCCGTCCACGCCGAACCGCTTCTCACCGCTCCACGTGGGCGTCTCCAGCTCCGCCAGCTCGGGCCGCGGCGGCACGGCCTCGGCTGCCAACAGCTTCCCCGCCTGCCGAGGCATGTCGTGGACCCCGGCCGAGACCAATGCGCTGATCGCCGTCTGGGGCAATGAGAGGCTAGCGGAGGCGCGAATGCAGCAGCTGGAGGGAGCCGGGACGGTGTTTTCTGGAAAGGCGCCGGGGCCAGCCATGTACGAGCGGGTGTCCCGAGCCCTGGCGGAGCTGGGCTACGAGAGGACCCCTTCTCAGTGCCGGGAGAGGATCAAGaCGCTGCGCCGCTGCTACAGCCGGGTGAAGGAGCACGGGATCGGCAAGAGGAAAAGCAGCTACTCCATCGAGCAGCTGGAGAAGGTGTTCGGCCAGGGTGGCTGGGACTCCCAGACCTGCCAGCCCGTGCTCATCAACAGCAGCGGGCTGTACCAGGAGATGGAAGGGCTGATGGCAGGCAGGGTTCGTTCGGCGGAGGCTGTGTCACTGGAGGTGCCAGAGAGGACCAGAGACTCAGGATTTGGGGTCCTAGACCTACCGCTGACCAGAGCAGCAAGATGCTCACTGACGGCCCTTCTGTGGCAAGATCTGGTAGATGTCCGCTGTCTGAGAGGGAGCGGGATGGATGGACGGATGGACAGGGACGTTAATGTGCTTCCGCTGACTGAAAACTCTGAAGACTCGGAAACAGAGGTGGAACCTGGGGATTTCAGAGACTGTGCGATGGCGGGGACTGATCTGGCTGTGGAGAGCAACGGAATATCGTTGGCCTAGGAAATTAGTTTTTCTAAGAAGAGGACGCTGCAGCTGCGGCAGGAATCCTCAGAAGAACTCCAgaggCAGGAAGTGATGCAGAACGTGATGCGTATCCTGGAGTCGGTGCAGATCAAGTGGGAGCACTTCCAGACATGGACGGACTTCTCGCGTCTGCACCTCTCCAACAAGCTGGCCATCTTCGGCGTGGGCTACAACACTCGCTGGCGGGAGGAGATCCGCTACCACTACGCTGAGATCAGCTCCCAGGTGCCCCTGGGGAAGCGGCTGCGGGAATACTTCAACCCCGAGAAGAGCGAGGGCCGTGTCATTATGACCAAGGTGCAGAAAATGAACTGGAAGAACGTCTACTACAAATTCCTGGACATCACGATCAGCGAGGCGCGGTGTCTGGAGCTGCACATGGAGGTGGACTGGATCCCTATTGCGCAATCCCGGGCAGCAGGGGGCACCAACGGGGCACAATACCTCCTGCCCGGGGGCATCCCCAAAACTCACGGGCTGTATGCCATAGGGTATGAGGAGGAGGATGCCACCTCTGAGGCCAAACTGGGAGAAGAGGGCTCCTCTCCAGACCCTGGCGAACCAGACAAAAGCCCGGATAAATCACATAAACTGGAGGACAGAGAGGAGCCGTCTCCCAAAGTGACTTACTGTTACCTTGGCATAGCCGAGGACAGGACTCTGCAGCAGTGTTTGTTCCAGCACTTTCAGAATTCAGGCAAGTACTTTGGTAGGGGGGAGCCCTCGGCAGTCACAAAGTTTCTCCTTTCTAACTGCAATGGGGCCTCCCCACGGCTAGCTATTTATATAAAATTCATTGAGGTGGAGCTGGACTTTCTCTCGGCGGGTTCCTTGGTGGAGTGTTTAGAAATTGCCATTGGATATTCCTTAAAGTTCAACAAAAAGGAGACATTGTAAAAACCCcgtcctgtttgttttgttttttcttgttcttgttggtATTCTTGCTGGTGACTTAAGGATGTACAACAAACTGTGATGAGCTTAAAGGACAACATCTTCCCCTTTGCAGCTACACTCTTCATGTTTTCAGGGAGGCAGTGTCCAAGGGACAGTGCAGCCAAGCGAGACTAATTCACTGCAGGCCCTCTGATTGGAGGAAGCCTTCAGCCAATCATTaaactgccttttctttttatttgtgaagTCAAACTTCAACCAGTGTGCCAG

Function

symbol description
msantd2 Orthologous to human MSANTD2 (Myb/SANT DNA binding domain containing 2).

NR:

description
PREDICTED: myb/SANT-like DNA-binding domain-containing protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004387 True 2196 mRNA 0.57 6 46180538 46187407

Neighbor

gene id symbol gene type direction distance location
AMCG00004384 NA coding upstream 181430 45981625 ~ 45999108 (+)
AMCG00004379 NA coding upstream 321264 45821901 ~ 45859274 (+)
AMCG00004378 NA coding upstream 873292 45302565 ~ 45307246 (+)
AMCG00004375 NA coding upstream 1037089 45125924 ~ 45143449 (+)
AMCG00004374 NA coding upstream 1083595 45068915 ~ 45096943 (+)
AMCG00004388 NA coding downstream 48950 46236357 ~ 46254391 (+)
AMCG00004390 thyn1 coding downstream 98043 46285450 ~ 46289245 (+)
AMCG00004389 NA coding downstream 113445 46300852 ~ 46319307 (+)
AMCG00004397 igsf9b,LOC108427954 coding downstream 440411 46627818 ~ 46657794 (+)
AMCG00004396 igsf9b coding downstream 482567 46669974 ~ 46681968 (+)
G7765 NA non-coding upstream 258733 45919390 ~ 45921805 (+)
G7662 vps11,LOC107588528,LOC107578557,LOC107691631 non-coding upstream 1563139 44616316 ~ 44617399 (+)
G7644 NA non-coding upstream 1592554 44587706 ~ 44587984 (+)
G7638 NA non-coding upstream 1605541 44574331 ~ 44574997 (+)
G7614 NA non-coding upstream 1637395 44530340 ~ 44543143 (+)
G7879 NA non-coding downstream 202981 46390388 ~ 46390751 (+)
G7906 NA non-coding downstream 528371 46715778 ~ 46717255 (+)
G7911 NA non-coding downstream 534422 46721829 ~ 46723088 (+)
G7949 NA non-coding downstream 804810 46992217 ~ 46997805 (+)
G7974 NA non-coding downstream 1460781 47648188 ~ 47648574 (+)
AMCG00004380 NA other upstream 212232 45962010 ~ 45968306 (+)
AMCG00004355 hyou1,LOC100380749 other upstream 1539806 44618185 ~ 44640732 (+)
G7329 fabp7,LOC108247051,LOC104945778 other upstream 3489429 42688779 ~ 42691109 (+)
AMCG00004304 NA other upstream 3964176 42210430 ~ 42216362 (+)
G7094 NA other upstream 4673307 41459576 ~ 41507231 (+)
G7999 NA other downstream 1959481 48146888 ~ 48147156 (+)
AMCG00004421 NA other downstream 2709710 48897117 ~ 49026355 (+)
G8099 NA other downstream 2745043 48932450 ~ 48934095 (+)
AMCG00004424 NA other downstream 2856183 49043590 ~ 49060055 (+)
AMCG00004425 zbtb44,LOC106580932,LOC106612543,LOC102781915 other downstream 3111329 49298736 ~ 49318835 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002223 MSANTD2 coding NC_007121.7 CM002894.2 31624143 ~ 31634427 (+)
grasscarp (Ctenopharyngodon idella) CI01000304_15265823_15269133 MSANTD2 coding CI01000304 null 15264968 ~ 15269591 (+)