AMCG00004421


Basic Information

Item Value
gene id AMCG00004421
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 48897117 ~ 49026355 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004421
ACCCCCCTCCACATTTGAGCAGCAGACTGCGCAAAGTGCCATAAGCCGGGAGAAGTGTGGATACCAGTGCCAGAACCATGCAGGGCAGTCAGACGAGATCAACTGTGCCATCCTACCTGGCATGGTCCATCATTAACATGCTGTGCTGCTGTCTTCCTATTGGCATCGCTGCAGTTATCTATTCCTGCAAAGTGGATAATGCCAACAACTCCGGGAACGCTACTGAAGCGCAAGAGGCGTCCAGGGTTGCCAAGATCCTGAACATAGTTGGAGTTGTAATTGGagtgatttttttaatcattgtaaTTGCCGTCTACGCTGCCGGCGGAAACAAGCATTAGCCAACTGAAGACTGCTTGAATTGTGTCCATCGCTTTATCATCTCCtgtcttacattttatttactgtcAACGCGTTTTTCTCCTTGGGCATGACTTTCTACAATTAACCGAAACAGCTGTATCTCCATCTCAGACAAGACTGTGTAGACATTGTATACCAAACTGCAGCACCAAAGCTGATCGGGCTTTTTCCAGCTTTCCTAGAATATCTCGATGGACATTCTTCCAATTGCCACTCATGGACTGTCCTCATCCGTCCCACTATGGTTCTGTACACGTTAATCAAtaaaaggatgttttttttcttacatcGTGTGTGCTTCTTT
>TU9953
GTCTCCTCCTCTGTCTTCACCACTGGGCGCACGTATAAAGAGTGCATTTGAAACCCCCCTCCACATTTGAGCAGCAGACTGCGCAAAGTGCCATAAGCCGGGAGAAGTGTGGATACCAGTGCCAGAACCATGCAGGGCAGTCAGACGAGATCAACTGTGCCATCCTACCTGGCATGGTCCATCATTAACATGCTGTGCTGCTGTCTTCCTATTGGCATCGCTGCAGTTATCTATTCCTGCAAAGTGGATAATGCCAACAACTCCGGGAACGCTACTGAAGCGCAAGAGGCGTCCAGGGTTGCCAAGATCCTGAACATAGTTGGAGTTGTAATTGGagtgatttttttaatcattgtaaTTGCCGTCTACGCTGCCGGCGGAAACAAGCATTAGCCAACTGAAGACTGCTTGAATTGTGTCCATCGCTTTATCATCTCCtgtcttacattttatttactgtcAACGCGTTTTTCTCCTTGGGCATGACTTTCTACAATTAACCGAAACAGCTGTATCTCCATCTCAGACAAGACTGTGTAGACATTGTATACCAAACTGCAGCACCAAAGCTGATCGGGCTTTTTCCAGCTTTCCTAGAATATCTCGATGGACATTCTTCCAATTGCCACTCATGGACTGTCCTCATCCGTCCCACTATGGTTCTGTACACGTTAATCAAtaaaaggatgttttttttcttacatcGTGTGTGCTTCTTTGCCCCCCTCTCAATGGTTGGTTTAT
>TU9954
ACTTCATCCTCCGGGAGAAGTGTGGATACCAGTGCCAGAACCATGCAGGGCAGTCAGACGAGATCAACTGTGCCATCCTACCTGGCATGGTCCATCATTAACATGCTGTGCTGCTGTCTTCCTATTGGCATCGCTGCAGTTATCTATTCCTGCAAAGTGGATAATGCCAACAACTCCGGGAACGCTACTGAAGCGCAAGAGGCGTCCAGGGTTGCCAAGATCCTGAACATAGTTGGAGTTGTAATTGGagtgatttttttaatcattgtaaTTGCCGTCTACGCTGCCGGCGGAAACAAGCATTAGCCAACTGAAGACTGCTTGAATTGTGTCCATCGCTTTATCATCTCCtgtcttacattttatttactgtcAACGCGTTTTTCTCCTTGGGCATGACTTTCTACAATTAACCGAAACAGCTGTATCTCCATCTCAGACAAGACTGTGTAGACATTGTATACCAAACTGCAGCACCAAAGCTGATCGGGCTTTTTCCAGCTTTCCTAGAATATCTCGATGGACATTCTTCCAATTGCCACTCATGGACTGTCCTCATCCGTCCCACTATGGTTCTGTACACGTTAATCAAtaaaaggatgttttttttacttaaaaaaaaaaaaaaaaaaaaatggaaatggggAAAAGAACGAGGAATGATTTGTATACATCG
>TU9955
ACTTCATCCTCCGGGAGAAGTGTGGATACCAGTGCCAGAACCATGCAGGGCAGTCAGACGAGATCAACTGTGCCATCCTACCTGGCATGGTCCATCATTAACATGCTGTGCTGCTGTCTTCCTATTGGCATCGCTGCAGTTATCTATTCCTGCAAAGTGGATAATGCCAACAACTCCGGGAACGCTACTGAAGCGCAAGAGGCGTCCAGGGTTGCCAAGATCCTGAACATAGTTGGAGTTGTAATTGGagtgatttttttaatcattgtaaTTGCCGTCTACGCTGCCGGCGGAAACAAGCATTAGCCAACTGAAGACTGCTTGAATTGTGTCCATCGCTTTATCATCTCCtgtcttacattttatttactgtcAACGCGTTTTTCTCCTTGGGCATGACTTTCTACAATTAACCGAAACAGCTGTATCTCCATCTCAGACAAGACTGTGTAGACATTGTATACCAAACTGCAGCACCAAAGCTGATCGGGCTTTTTCCAGCTTTCCTAGAATATCTCGATGGACATTCTTCCAATTGCCACTCATGGACTGTCCTCATCCGTCCCACTATGGTTCTGTACACGTTAATCAAtaaaaggatgttttttttcttacatcGTGTGTGCTTCTTTGCCCCCCTCTCAATGGTTGGTTTAT

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004421 False 667 mRNA 0.46 2 48977642 48978607
TU9953 True 744 lncRNA 0.46 2 48977590 48978632
TU9954 False 676 lncRNA 0.39 4 48897117 49026355
TU9955 False 657 lncRNA 0.43 3 48897117 48978632

Neighbor

gene id symbol gene type direction distance location
AMCG00004415 NA coding upstream 50514 48830538 ~ 48846603 (+)
AMCG00004416 LOC105903796 coding upstream 253687 48629172 ~ 48643430 (+)
AMCG00004414 NA coding upstream 272965 48613149 ~ 48624152 (+)
AMCG00004404 LOC104954612 coding upstream 444420 48445728 ~ 48452697 (+)
AMCG00004407 NA coding upstream 453850 48428416 ~ 48443267 (+)
AMCG00004426 LOC106580931 coding downstream 252805 49279160 ~ 49293068 (+)
AMCG00004428 NA coding downstream 376853 49403208 ~ 49411567 (+)
AMCG00004427 NA coding downstream 399410 49425765 ~ 49429808 (+)
AMCG00004431 NA coding downstream 492769 49519124 ~ 49522913 (+)
AMCG00004430 LOC107598122 coding downstream 520914 49547269 ~ 49571300 (+)
G8083 NA non-coding upstream 48991 48847526 ~ 48848126 (+)
G8044 zbtb16 non-coding upstream 428306 48463181 ~ 48468811 (+)
G7977 NA non-coding upstream 1211236 47685520 ~ 47685881 (+)
G7974 NA non-coding upstream 1248543 47648188 ~ 47648574 (+)
G7949 NA non-coding upstream 1899312 46992217 ~ 46997805 (+)
G8140 NA non-coding downstream 220133 49246488 ~ 49248034 (+)
G8167 NA non-coding downstream 407688 49434043 ~ 49435751 (+)
G8188 NA non-coding downstream 555763 49582118 ~ 49586095 (+)
G8356 NA non-coding downstream 1040080 50066435 ~ 50068081 (+)
G8371 NA non-coding downstream 1111274 50137629 ~ 50139705 (+)
G7999 NA other upstream 749961 48146888 ~ 48147156 (+)
AMCG00004380 NA other upstream 2928811 45962010 ~ 45968306 (+)
AMCG00004355 hyou1,LOC100380749 other upstream 4256385 44618185 ~ 44640732 (+)
G7329 fabp7,LOC108247051,LOC104945778 other upstream 6206008 42688779 ~ 42691109 (+)
AMCG00004304 NA other upstream 6680755 42210430 ~ 42216362 (+)
AMCG00004424 NA other downstream 17235 49043590 ~ 49060055 (+)
AMCG00004425 zbtb44,LOC106580932,LOC106612543,LOC102781915 other downstream 272381 49298736 ~ 49318835 (+)
AMCG00004442 NA other downstream 780006 49806361 ~ 49814024 (+)
AMCG00004449 NA other downstream 912197 49938552 ~ 49951533 (+)
G8377 NA other downstream 1124909 50151264 ~ 50157719 (+)

Expression


Co-expression Network