AMCG00004409


Basic Information

Item Value
gene id AMCG00004409
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 48404180 ~ 48425709 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004409
atgtggGCTCAGTGGACGGACGTGGTTGAGACACGAAGCATGGTGCACACGCCCAACACGTGTCCGTCAACGCCCCCCGGGGTCCGTGAGCGCGCACGCTGTCGACGTGCGCGTCTCCCGCACGGCGAGACCGATCCACGGGGGCGCGCCGGGTGTGCGGCTGGCGGATGGAGGAGTAGGCGCGGATCTGCTGCGGGGGGAGAAGGTTTCCTTGAAAACTGCCGAAAAAAGAGGAGGATCGGGTTTGCAGCCATGACCGCCGAGCAGCCGTGCGAGCAGGGGGACTCCTCCGGCCATGCGAGTCACATTCTGATCAGCCAGCTGAGAGAGATCACGGGCACCCAGGACGTTGAGATCTTACAGAGAGCTCTGAAGGCGGCCAATGGAGACATGAGTCAAGCAATCAGTCTGCTAACTGCCCAGGTGCCAGAGGAAGATGTCATAGCGGTGGAGCCTTCTGATACGGAAGGAAGTGCCGTGGGCAGGAAAGCGCCAACAAAAGTCATCGACCTTACTGCCAGCGGTGACAGAGATGACCTCCAGACCGCCATCCAACTAAGTTTGCAGGAGTCCCAGAGTGGCCAAGGGGAAGACAGGGATTTAAACCGGGCTCTGGAGGCGAGTGTGGCTGAGAATAAAGCTCGCGTGAAGAGAAAGCGGTGCGAGGCCCTGGTGGAGAGCTCCAACCCTGCCGACTGGATCAGACAGGACGACTGGCCGGTGGGCCTGAGGAATGTGGGCAACACCTGTTGGTTCAGTGCTGTCATACAgtctttgttCCACCTGCCCGAATTCCGAAGACTGGTCCTGAATTACTGCTTGTCGGAGAGCGTCCTGGAAAAGTGCAAGAGCCACAGCGAGAAAAGGAACATCGCCTTCATGCAGGAGCTGCGATGCCTCTTCGCCCTGATGGTGGGCTCCAGCCGCAGGTTTGTGGACCCCTCGGCCGCCGTGGAGCTCCTGAAGGATGCGTTTCGGACCAGCGAAGCTCAGCAGGATGTCAGTGAGTTCACCCACAAACTCCTTGACTGGCTAGAGGATGCTTTCCAGCTTGCAGCAAATGGAAGTAGTCCTGAAGATAAGCAAGAGAACCCAATGGTGCAGCTTTTCTATGGAACATTTGTGGCTGAACGAACCCACGAAGGCAAGACCCTCTCCAACATCGAACAGTTTGGACAGTATCCTCTGCAGGTCAATGGCTTCAACAACCTGGATGAGTGTCTGGAAGGGGCCATGGTGGAGGGAGAGATCGAGGCCCTGCACTCCGATCAAACCGTACATCCCGGACAGGAGCGTTGGTTTTCAAAGTTACCACCGGTCCTGACCTTTGAACTCTCCCGGTTTGAGTTCAATCAGTCTCTGGGACGGCCAGAGAAAATTCATAAAAAATTGGAGTTCCCCCAGGTCATATACATGGACAGGTATCTTCACAAGAACATGGAGTTGACccagaggaggagaggggaggcgaAGAAGCTGAAAGAGCAGCTGACAGCTCTGCAGCAGAAACTGGAGAGcTACAACAGTTACGGCTCAGGGCCAGCTAAATATCCCTTGGCAGATATGCTGCAGTACGTGCTGGAGTTTGCCACCACCAAGCCTTCCAGCGTCTCTCCTGCGGAGGACGTCCGAGCGGCCTCGCCCTCTCCAGCCACGTCACTCGATGCCAGCGCACAGACAGAGCCCACACCAGAGGAAACCAGTCCATCAGAAGAGGAGGACACTACCTCGCCCGACTGTATAAACTGCCAGGCTGCTCCCACCCAGAGGACACCCATCTACAAGCCATTCACGCAGTGCAGGCCCCCCATGgagccacccccccaccccgccccccaCAGCGTGTCCGTGGAGGAGCTGCACTTCGTCAGGGGCTGCCTGCAGCGCTGGAGGGCCGAGGTGGAGCACAACATTCAAGAGCTCAAAGACAGTATTGACAGAGTCAGCCACGCACTGGAAAACATGTACTCGGATGGCAGTTTATGCCAGGTGCCTTACCGACTGCACGCGGTGCTCGTGCATGAAGGCCAGGCTTCAGCCGGCCACTACTGGGCCTACATCTATGACCATGGCCGGCAGCGCTGGCTCAAGTACAACGATATCTCGGTCACCGAGTCGACCTGGGAGGAGTTGGAGAGAGACTCCTATGGCGGGATGAAGAACGCCAGTGCCTACTGCCTCATGTACATCGACGATAAGCTGACACACCTCATAGCAGAGGACAGTGACATGGAGACGGGGCAGGTGCTACGGGGGATGGACTCACTGCCAACCATCCTGAGGCACTATGTCCGGGAGGACAACCACTGGTTCCAGCAGGAATTGGAGGAGTGGGAGGAGCAGTTTCGCAAAGTCCCGCAGAAAGAGTCCCCTGTTCCTGTggcaacagacacacaggaatCTTCCTCTGAACCGCCCGCTGAAGCGGCGCCCAGTCAGCCAGCCGGCCGCTCGCTGGTGTCAGAACACGCGGTGATGGTGAAGGAGCAGACGGCACAGGCTATCGCCAACGCGGCCGACTGCTACCAGAAGAATGGTGTGGAGGCCGCCCTCCATGAGGGCTCTGAGGCAGGGGCTGAGGCAGGGGCACGGGCAGAGGGCGGCAGTTCTGAGCCCGAGTCCACGCCTGATTCGGAGTCTGAGGCTGAAGCCCAGCCCCAGCCGCCGCAGCCTTCTGAGGCAGAGAATAGAGAGGCTGAGAGCCGGGTCTCCGAGGTGGAGATTCCCAGTGTAGGAAAGATTCTTGTCCGAGCTGATGCCGATGGGTATAACGAGGAGATGATGCTTACTCCAGCCATGCAAGGAATTCTCCTGGCTATTGCTAAAGCAAGGCAGGTCTTTGACAAGGACGGGCCCGAAGCGGCTCTCATTAAGGCTTTTCACGAGGAGTACTCCCGCCTGTACATGCTGGCGATAGAGAAGGCCACGCCGCAGAACGACCCGCGCCTCCAGCACGTCCTGGTCTACTTCTTCCAGAACCGAGCCCCGAAACGCGTCATCGAGAGGGCTCTGCTGGAGCAGTTTGCAGACCGGAACCTCAGCTTTGATGAGAGGTCCATCAGTATTATGAAGGAGGCTCGATCCAAGCTGCGTCTAATTGGGCCAGAGGACATGGATGTGGAGGAATACACGAAATGGCACGAAGACTACAGCCTGTTTCGGAAAGTGTTTGTGTATCTCCTGACGGGCCTGGAGCAGTATCAGAATGGAAAAATAAGGGAAGCTCTGAACTACCTGGTGTACGCCTACCAGAACAACACGATGCTGCTGAGGAATGGGGAGAACAGAGGCGTGGAGGAGTCGCTCATTGCACTTTATAGGAGGAAATGTCTAACCGAGCTGAATGAGAAAGCAGCAACTCTGTTCAAGAGCGGTGAGGACAGCGATGTGATGGAGGGGATGAGCATCATGAATGACATGGTCATTCCCTGCATGCACCTGATGATTAGCAATGATATCAGCCAGGAGGACCTGGACGCCATCGAGGTCATGAGGAGCCGCTGGTGCTCCTACCTGGGCCAGGACATGGATGCCACCCTACAAGAAAAACTCGGGGAGTTCTTGCCCAGGCTGCTGGACTGCTCGGCAGAAGTCATCGTCCTAAAGGAACCGCCGAAGATCCGTCCCAACTCGCCGCACGACCTGTGCAGCAGGTTCGCGGCTGTATTGGAGTCCATCCATGGCAACTCGATCGTGACGGTCAAATAAGACTTTGATGAACAAAAGGAGAAAACCCAcaactaaaatgaaaagcacatatCTATTTATATCGTCCAGACTTTGAACATTTTTAAGGCACTTTTCCACCAAAACTGAAGGGTGGCGTAGCTCTGTCAGCCCCATTCTTGATTAAGCATAAACTGCAGAGGAAACAGATACTGATCTACCACTTCACAGCAACGGTCCTGAAGATGTTCCATGGTAGTtgtcacatttaatttgtctgtcACTTTGTTCTTTCACAATTTGTGGTCAGCACTGTACCATCAGGTTCAATATCGATCAAGGACTGGGATTTTATCTTAACATTGCCTAAATTGCCTTATTCTGTTTCTGGTTTTTATTCTATTTCTAGTCTTTTTAAGCCTTTTCAAGCCTTTTCAACAGTTGTACAAGAAATCTGAAGCACTAACACTTGACTAGTTGACCCCCACCTTGAAAACTAACTACTATCTTAACAACACATAATTCCTCGAGTGAAAAAGCAATACTAATTCTCCCATTTAGTTACACTATAGAGATTTCAGTAAGCATCCATTACTCCAGCTGAGTATTTTTCCCATAAAAGCAATAAGACTGTTGCCTTGAACAAAAGCTCATGATCTGCAATGgccattgtttttgtgtgagaactgacatatatttatatttaaggcCCTGTGAACTTCATGGATGACTGAACAAGCAACACACTGTCAACAAGGGACCTTCAACGGCAACAAACGCATCAAATAAtggcaaaatataaatgtatttatttataattttaattggcAGGGGCTCACTTGaagaatatatttatgaataataaCATACAGTTCTTCAGATTTTAAGGTTCACTGCAAGAATCAGTCCTTACAGTTTTATTCGTCAACTATTTTAATCCTATTTGGTGAACGTGCGCAAAGGGGAGGAAACCCAATTGCCTCCCTGCCTTCCTACTGACTGATGCCCACTCCCTACTTTGAAGCCATGATGTTTAAACCAAAGAAAGTGTTACCACACAAAGCAATCTGTTATACTTTTCAGCTTTATCTTCAATAAACTTTCACTCTTTCCCTTGACCTCTGGCACGtctatgatttttctttttctttttccttttacttcttcattctttcCCTCACACATACTgttttgtccttttgttttttttgtagacATACATTTGGAGTATTAATAGATACTTTTGGTCATTGCTGTTATGAAACACAGTCTACctcaaaacaatgtttattttaaatgtttctataaaactgtaaaatatgttttgctgtaATCCACTCTCCCTGTTTTTATGAAGATCTTTTCAAAGGAAGTGCAAAATGCATCTTGCTGGCCATGTGTTTTCTGGTGAGAAGGGATTGTGGTTTAAGTTTAATCCTGGGTTTTAGTTCATTTTTAGGATTGCGTGTATGAAATGCCTAGAGTTTGCTAAACTCATgttcttcaatttgttttctgtgtgtcttgttttttatatgtataacaGAATTAAATTGTTGCTCTGGAATATCTGTCTTATCAGCTTTTATATGCCAGCTTTACATGGTTATGGCTCTCTATGTTGCTTTGAGATGCAGTGCTTTTTTTAGggttttttttacagtttgtgtaAACACTGGGTGGCTTCGTCATCAAGAAGAACAGAGACATCACTGTGTCATGTGGAGGTACCAGGTAAATGCCCTGTTTCTACTTTATTGTGACCTATTACTCTGGATAAATTCTTTAGTAATTCACTTTCCACTGTTTGCTCTTCCCACAATTCAATGTAGAATTTTCAGGAGAGATGTCCTA

Function

GO:

id name namespace
GO:0021551 central nervous system morphogenesis biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function

KEGG:

id description
K21122 USP28; ubiquitin carboxyl-terminal hydrolase 28

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004409 True 5520 mRNA 0.50 26 48404180 48425709

Neighbor

gene id symbol gene type direction distance location
AMCG00004411 NA coding downstream 2645 48400326 ~ 48401535 (-)
AMCG00004410 NA coding downstream 3903 48398817 ~ 48400277 (-)
AMCG00004402 cadm1,LOC106603642 coding downstream 1401729 46998008 ~ 47002451 (-)
AMCG00004392 NA coding downstream 2068166 46319298 ~ 46336014 (-)
AMCG00004391 v26bl,LOC108423787,LOC107751386,LOC107588734,LOC107691644,LOC105024202 coding downstream 2103814 46289169 ~ 46300366 (-)
AMCG00004413 NA coding upstream 157430 48583139 ~ 48584401 (-)
AMCG00004418 NA coding upstream 463368 48889077 ~ 48895001 (-)
AMCG00004417 NA coding upstream 485288 48910997 ~ 48930564 (-)
AMCG00004419 NA coding upstream 506756 48932465 ~ 48934416 (-)
AMCG00004423 LOC106580930,LOC106612539 coding upstream 824527 49250236 ~ 49259701 (-)
G7979 NA non-coding downstream 717613 47685925 ~ 47686567 (-)
G7978 NA non-coding downstream 718306 47685631 ~ 47685874 (-)
G7975 NA non-coding downstream 755598 47648171 ~ 47648582 (-)
G7936 sc5d non-coding downstream 1511150 46890942 ~ 46893030 (-)
G7935 NA non-coding downstream 1514047 46889647 ~ 46890133 (-)
G8116 NA non-coding upstream 529667 48955376 ~ 48956463 (-)
G8118 NA non-coding upstream 551915 48977624 ~ 49048073 (-)
G8133 NA non-coding upstream 675999 49101708 ~ 49101912 (-)
G8281 NA non-coding upstream 1385669 49811378 ~ 49814054 (-)
G8286 NA non-coding upstream 1418873 49844582 ~ 49858455 (-)
AMCG00004403 cadm1a,LOC107548188,LOC107715321 other downstream 1097591 47048124 ~ 47306589 (-)
AMCG00004398 anc13,anapc13,LOC107756075,LOC107693524 other downstream 1516426 46883292 ~ 46887754 (-)
G7882 LOC107575789 other downstream 1935746 46468125 ~ 46468434 (-)
G7868 NA other downstream 2096861 46306926 ~ 46307319 (-)
AMCG00004372 LOC108423781,LOC105921217 other downstream 3692129 44623190 ~ 44712051 (-)
AMCG00004412 zbtb16,zbtb16a,LOC107703518 other upstream 37472 48463181 ~ 48480715 (-)
AMCG00004420 NA other upstream 514315 48940024 ~ 48985311 (-)
AMCG00004429 NA other upstream 985498 49411207 ~ 49425182 (-)
G8310 NA other upstream 1523152 49948861 ~ 49949592 (-)
G8340 NA other upstream 1579423 50005132 ~ 50008694 (-)

Expression


Co-expression Network