AMCG00004450 (ube4a)


Basic Information

Item Value
gene id AMCG00004450
gene name ube4a
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 49968474 ~ 49983158 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004450
gtgcaggctCCTGGTCAGTGCCTGTGGATGGCGTTGGTGCCCCAGTGAAATGACAGACCAGGGCAATAACAACCAGAGCTTCTCCCGAAACCCCTTTGCTGCCCTCTTCAGCTCCCTCGCTGACGCCAAGCAGTTCGCATCCgggcagaagcagcagcagccgaACACACAGCCTCCTTCAGATGAGTCGGGGGACAGTGCGGAGGACTCGGACAACTCGGTGTCGGACAGCATCGATGACAATGACGATTCGCTGGCCGAGATCAGCCGCTCCTTCCGATCGCAGCAGGAGATATGTCAGCAGCTCAACGTCAACCACATGATCCAGAGGATTTTCCTCATCACGCTGGACAACAGTGACCCCAGCCTGAGGGGGGGGAATGGGATCCCTCCACGCTGTGTTTATCTGGAGGAGATGGCTGCAGACCTGGACGGACAGGACTGGCTGGATATGGACAACATAGAGCAGGCCCTGTTCAACCGTCTGCTCTTGCCGGAACCAGGAAATCATCTGATCTACATGACTTCCTCCAGCACGGTCAACCTGTCTGCAGATCGTGACGCCGGGGAGAAGTCTGCGATGCCGTACCTCTTTGCGTGTTACCAGAGAGCAAAGGAGGAGATCACCAAAGTGCCGGAGAAGCTGCTCCCGTACGCTCAACGCTGTAAGAACCTGACCGTGTCCAACGCCCACACTGTTCTGCTTACGCCCGAGATCTATGTCAGCCAGAACATCTATGAGCAGCTGCTGGACCTGCTGCTGGACGGAGTGAATGGAGCGCagctggaggaggtgcTGGAGTTTGTGGAGGAGGTTATCACCGCCCTACTGGCAGACCAGGAGGTGCGCACATTTGGGGAGGTGATGGTGCCAGTTCTAGACATTTTACATGGCCGAGTGAAGGACCTAGACCTGTGCCAGCTGCTGCTTTACTCCTACCTAGACATCCTGCTTTACTTCAGTCGCCAGAGAGACATCGCAAAGGTGTTAGTGGAACACATTCAACCCAAAGACCCCAGCAATGGGCTGCAGTACCAGAAGACACTGTTAGGGGCAGTGCTGAACATCTCTTGCCTGTTGAAGACCCCTGGAGTGGTGGAGAACCACAGCTTCTTCCTGAACCCTTCGCGGTCCAGTCCGCAGGAGATGAAAGTGCAGGAGTCCAACATCCACCAGTTCATGGGTCAGTTTCATGACAAGCTCCACCAGATCCTGAAGAACCTTCTCCAGCAATCTACTGAGACACGTCACCTTCTGCTCTCCTGGTTGGGTGGCTGCCTGCAAGCCAATGCTGGGCGTACGAAGATCTGGGCCAACCAGATGCCCGAGATCTTCTTCCAGATGTACGCCTCCGACGCCTTCTTCCTCAACCTTGGCGCCGTGCTGCTCAAGCTGTGCCAACCTTTCTGTCGGCCTCGTTCCACCAAACTGCTGACTTTTAACCCCACCTACTGCGCCCTCAAGGAGCTGAGCGAGGAGGAGAGACGCAATCGCAACGTACATGCCCAAGGTCTGGATAAAGAGACCTGTTTGATCCCACCGCCCCCCCAGCAGACAGTTGAGTTTGCCCAGTCTTACAACCTGCTGACCGAGAACCTGATTCTGACGCAGTCGGCCTTGCACCTTGGCTTTCACAGGCTCCACGACCAGATGGTGAAGATGAATCAGTCCTTGCACCGACTGCAAGGCTCGTGGCGGGAGGCCCAGCGTGGGACGGGACCGGGGGCGGAGCAGCTGCGGGAGCAGTTTGAACGCCTAATGACCGTCTACCTCTCTACCAAGGCGGCCGCCACGCAGCCCAGCATGCTGCAGTGCTGCCTCAATCTGCAGGCCTCTACTGCCGCCCTGCTGGTGCAGCTGGGCCTCGGCCCCCCAGGCTCAGAGCACGCTGAGCTCAGCTTCCCTCTGCCACCTCTGACCGACAGTCTACTTTGCTATGTGCCAGAGTTCTTCGCTGAGAACATGGGAGATTTCTTCATCTTTTTGCGGCGTTTTGCGGACGAGGTGTTGGAGTCCTCAGGGGAGTGTCTGGAGCAGGTTCTGCACTTCATTACAGTGTTCATGGGAAATGTGGAGAGGATGAAGAACCCCCATCTGCGGGCCAAGCTGGCAGAGGTTCTGGAGGCTGTGATGCCACACCTGGAGCCCGTGTCGCCGGGCCCTGCCCAGTCCAGCATGTTCCAGCGCCAGAGGGTCTTCTGCTCCTACCGCCATGCTGCGCACCTGGCCGAGGCTCTCATCACAGTGTTTGTGGACATTGAGTTCACAGGGGACCCTCACCAGTTTGAGCAGAAGTTCAATTACCGGCGACCCATGTACCCAATCCTCAAGTACATGTGGGGGAAGGACAACTACAGGGAGAGCATCAAGCGGCTGGCAGACTATGCCTCTGAGAACCTGGAGGCCATGAacccccctctcttcctccgCTTCCTGAACCTGCTGATGAACGATGCCATCTTCCTGCTGGACGAGGCCATCCAGTACCTCAGCAAGATCAAGCTGCTACAGATCGAGCGTGACCAGGGGGAGTGGGAGGCCCTGGCCCCTGATGCCAGGCGGGAGAAGGAGTCCAGCCTGCAGATGTTTGGGCAGCTGGGCCGCTTCCACAACATCATGTCCAATGAGACCATCGGCACCCTGTCCTTCCTCACGTCCGATATCCGGTGCTTGTTCGTGCATCCTTTCCTGGCAGAGAGGATCATCTCCATGCTCAACTACTTCCTGCAGCACCTGGTCGGCCCCAAGATGGGTGCACTGAAAGTGAAAGACTTCAGCGAGTTCGACTTCAAACCCCAGCAGCTGGTCTCCGACATCTGTACCATCTACCTCAACCTGGGAGATGAGGAGAATTTCTGTGCCACTGTGCCCAAAGATGGACGCTCCTACTCGCCTACTCTCTTCGCCCAGACCGTTCGTGTCCTGAAGAAGATCAACAAGCCGGGCAACATGATTGTGGCCTTCAGCATGCTCGCTGACAAGATCAAGTCCCTGGCAGacaggcagcagcaggaggaagagacTGATCAGACAGACCCGTTTAACCGCAGCCCCCTCACCATGGATCAGATCCGGCCCAACGAGGAGCTGAGGGAGAGGATCCGGCAGTGGTTGGCCGAGCGCAAACAAGAGCGACAGCAAATGGGCCCCAGTGGCTAGCCCGGAGAGCAGCCAGGCCACGTGTCCCTGCAGAAAGACTACTGCCTTCCCCACACCTTCAGCCAGCTGTGCGCAACCTGTCCTCTTGTGCTCACGTTCGCCTTCAGACATCATCTCACTTTCGACTGCTGCCAGCTCGCTCTCGGCGCACACACACGCCAGCCTGCTCCTGTCTTCAAAGCAAAAGCAAGAATCCCACATCGCTGAAAACCGACTAATGCACCAAGCTCTGTTGAAGTTGGCACCCTCAGGGATAAACGGGAGGGAGCTCGGATTGAATTCAGCCAAAAGtgcttatttgtgtgtgtggcgtAATGGGAGGTGTGAAGAGACTGGCAGCAGGAACTTCAGTTTTTGCCTGAGCATCTCTCGAGCATTTAATTAGCGAGTTAGAGCATTCCAGAAGGGAGAGGGGTTGAACTATGTTTATTgttcaaaaaaaagaaagaaaggaagaaagtcTCAGATGTTTTGTAGAATTGGTTGTTCTCTGCTACAGGAGGGCCAAATAAGTGAATAATTGTCTGtagcttttcttttgttcattCAGTCTGATATTGTTTTGCATATGTGGTAAAACCCTAGCTAAATATTGAAACTcctggaaaatatttttatttaattttgtcttcTTTTAAAAAAGACTTTAAGTCTGGTAATTGACTGAAATGACCCTGCATATAAATTAAGAGAATCTGACTAAATGTATGATGTGGAATGTGGATGGTGTggcacatttgtgttttatttgtatttgtatgctAATTGGCCCTGCTTAAGCTGTAGATAAAATGCTGTGTGCAAAAGCAATGCAAAAcctttgaacatttaaaaataataataacgtagATATGCAATTGCTGGATCAGGCAGGATGCTGAATGGTATTTCCAGCTGGcagcattaaaacataaaatggcagaatataatttgaatgtagTGTAAAAGCATGGAGGTACCGGAAACACAAACAGAGTGAAAACAGGTGATGAAAAAACATTGAAGGGGGTTGGAAAACTTTACCTATTGATCaggccatgttttttttttttctttcttcaaccAGATGTTACATAGATGCGCTGATTTTCAGAGTAGATAAGGTGAATCTCTTGCTCCATGGCAGCATTTGTTGACTATGTTCCAGGGACATCTGCTGATAACCtgggatgtttttttgtaatataacaGAAGGAGGAAGCACAAcagaaataacatgaatgtgaatccattatctatgtattttctttgtgtgtgtgatgtgtgggCAATATCTCGTTCATGTGGGCAGCAAAACCTTTATTCAAAAGTATGTATGTTGTTCTTATGATTTCTGTATGGTAAGTTgagtttttttctgtgttgtctGCACACTAATTACAGGTTATGTCTTATGATCTCCTTTAAGAAGAATAAGGAATTCATTCTTGAGACGGaggcatttgtttgtatttaaggGAATTTCCCCGTGCCTCGGTTTGTTCGCTCTACTTTGGAAATTTGAATATTTGCTGAGAGTTTCAGTTTTGGTCTGTCAGGGCCGTCGGTACAATCGACAGCACAATTTCacagtttgctttttaattgaatcctgCTAACCAGTAAAAGTTGTATTTAGTTGTATACCAGTTGAGTCCAGTTAGAGCAAGTTCTCCTTTTTGCCCTCAACACTACTCAAGAGCCTGCTTTCGTGCCTAGGGTAGGTCAGACGAGTACAGGTGTTATTTCAACACCATCTTCAATCAGTCTGTATCCCACTGTGTTCTACCTACATCTATCGGTATTTCTTAGCTGGAACCAGTAATACCTGCTCATGAAATGTTGACAGAAATTAACCACATGGTCGATATGAGAGTACAACATGCCTTGTCTCATTTTTAATACAGAGCCTGCACATTGACAAATACCACACAGTGTGCCCCAAAGTAGTATATGTTTAACCTGGGAGTATatgtaaaaagaataataataaccaaaacaaaatgcattctcTTTGAAGTTATGTCCAGAGAATGTCAGAAAGCTTGGTGTGTATTGGTGTActgtttagaaaaaataatttggtaCACAACAACTAAATCTTACACGCAGAACCGATAAAGACAGCAATGAACACACATTCTGCATGCTTTGGACTTTGAGGGGTACAGATgtaaggtatatatatataaataataaggcCTTGTTCTTGTGTGTTACCCCTGTGGATAGTGTTTGCCAGGTGGCTTTTGTTCAATTACCAGAATGCTCTATTTCATCGGGACTCGAGCGTGCAACCCAAACTGGCAGACATTGGAGCTGTACCTCTGATATTAAGAATTTAGATATTGTGGGGTAGAAACTATGAACTGTgcttcattacttttttttttttttttttgacctGTTTATT

Function

symbol description
ube4a Predicted to enable ubiquitin-ubiquitin ligase activity. Predicted to be involved in protein polyubiquitination and ubiquitin-dependent ERAD pathway. Predicted to act upstream of or within protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to be part of ubiquitin ligase complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human UBE4A (ubiquitination factor E4A).

NR:

description
PREDICTED: ubiquitin conjugation factor E4 A

GO: NA

KEGG:

id description
K10596 UBE4A; ubiquitin conjugation factor E4 A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004450 True 5552 mRNA 0.50 19 49968474 49983158

Neighbor

gene id symbol gene type direction distance location
AMCG00004452 NA coding upstream 4758 49952140 ~ 49963716 (+)
AMCG00004451 abcg4,abcg4a,LOC107597525,LOC108429752,LOC107722792,LOC107677424,LOC107587350 coding upstream 61623 49897636 ~ 49906851 (+)
AMCG00004454 NA coding upstream 75463 49883386 ~ 49893011 (+)
AMCG00004443 NA coding upstream 150656 49815273 ~ 49817818 (+)
AMCG00004441 dpagt1 coding upstream 164070 49797543 ~ 49804404 (+)
AMCG00004448 LOC108233819,LOC107098727 coding downstream 1569 49984727 ~ 49987491 (+)
AMCG00004453 kmt2a coding downstream 6117 49989275 ~ 49989664 (+)
AMCG00004455 LOC107601691 coding downstream 21152 50004310 ~ 50032342 (+)
AMCG00004458 NA coding downstream 138271 50121429 ~ 50135834 (+)
AMCG00004459 NA coding downstream 201544 50184702 ~ 50187493 (+)
G8188 NA non-coding upstream 382379 49582118 ~ 49586095 (+)
G8167 NA non-coding upstream 532723 49434043 ~ 49435751 (+)
G8140 NA non-coding upstream 720440 49246488 ~ 49248034 (+)
G8111 NA non-coding upstream 939291 49024156 ~ 49029183 (+)
G8103 NA non-coding upstream 1008643 48955967 ~ 48959831 (+)
G8356 NA non-coding downstream 83277 50066435 ~ 50068081 (+)
G8371 NA non-coding downstream 154471 50137629 ~ 50139705 (+)
G8372 cbl,LOC107601723 non-coding downstream 160147 50143305 ~ 50144990 (+)
G8373 NA non-coding downstream 162213 50145371 ~ 50145823 (+)
G8374 NA non-coding downstream 164718 50147876 ~ 50148195 (+)
AMCG00004449 NA other upstream 16941 49938552 ~ 49951533 (+)
AMCG00004442 NA other upstream 154450 49806361 ~ 49814024 (+)
AMCG00004425 zbtb44,LOC106580932,LOC106612543,LOC102781915 other upstream 649639 49298736 ~ 49318835 (+)
AMCG00004424 NA other upstream 908419 49043590 ~ 49060055 (+)
G8099 NA other upstream 1034379 48932450 ~ 48934095 (+)
G8377 NA other downstream 168106 50151264 ~ 50157719 (+)
AMCG00004463 NA other downstream 253519 50236677 ~ 50243043 (+)
AMCG00004477 NA other downstream 758230 50741388 ~ 50753432 (+)
G8606 NA other downstream 1131783 51114941 ~ 51115262 (+)
AMCG00004501 NA other downstream 1956391 51939549 ~ 51946818 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000072_03336220_03345300 UBE4A coding CI01000072 null 3336220 ~ 3345804 (+)