AMCG00004464 (rps25,LOC107758587,LOC107583381,LOC107679519,LOC107565279)


Basic Information

Item Value
gene id AMCG00004464
gene name rps25,LOC107758587,LOC107583381,LOC107679519,LOC107565279
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 50212217 ~ 50214554 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004464
ctttcttcctttctgtccGACATCTTGACGCTGCAGCATCATGCCTCCGAAGGAcgataagaaaaagaaagattcGGGAAAGTCCTCAAAGAAGGACAAGGACCCCGTTAATAAGTCTGGAGGCAAGGCCAAGAAGAagAAGTGGTCCAAAGGGAAGGTGAGGGACAAGCTCAACAACCTGGTCCTCTTCGACAAGGCCACCTATGACAAGCTGTACAAGGAGGTGCCCAACTACAAACTCATCACACCTGCTGTGGTCTCCGAGAGGCTGAAGATCAGAGGCTCTCTGGCCAGGGCTGCTCTCCAGGAACTGCTCAACAAAGGGATGATCAAGCTCGTTTCGAAACACAGAGCGCAGGTCATCTACACGAGAAACACCAAGGGTGGTGATGCTCCTGGAGATGAGAAGGAGGCATAAACAGattATGCATCAAGGAGGCCTGTGAAGATTTTGTTGGGattgtaaaatatacaataaaaaaatgaaaagaaca

Function

symbol description
rps25 Predicted to be a structural constituent of ribosome. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Orthologous to human RPS25 (ribosomal protein S25).

NR:

description
PREDICTED: 40S ribosomal protein S25-like, partial

GO:

id name namespace
GO:0005840 ribosome cellular_component

KEGG:

id description
K02975 RP-S25e, RPS25; small subunit ribosomal protein S25e

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004464 True 494 mRNA 0.48 5 50212217 50214554

Neighbor

gene id symbol gene type direction distance location
AMCG00004462 slc37a4,LOC106612980,LOC107670393,LOC107593481 coding upstream 27 50199505 ~ 50212190 (+)
AMCG00004459 NA coding upstream 24724 50184702 ~ 50187493 (+)
AMCG00004458 NA coding upstream 76383 50121429 ~ 50135834 (+)
AMCG00004455 LOC107601691 coding upstream 179875 50004310 ~ 50032342 (+)
AMCG00004453 kmt2a coding upstream 222553 49989275 ~ 49989664 (+)
AMCG00004468 NA coding downstream 44277 50258831 ~ 50265447 (+)
AMCG00004469 tbrg1 coding downstream 57988 50272542 ~ 50281575 (+)
AMCG00004473 LOC100709321,LOC106581230,LOC102786114,LOC104941976 coding downstream 406425 50620979 ~ 50630765 (+)
AMCG00004472 ilvbl,LOC107758073,LOC107670636 coding downstream 446908 50661462 ~ 50670585 (+)
AMCG00004474 ei24,LOC106567936,LOC106603545 coding downstream 458539 50673093 ~ 50678350 (+)
G8380 cbl,LOC102793573 non-coding upstream 40266 50171520 ~ 50171951 (+)
G8376 NA non-coding upstream 62675 50149325 ~ 50149542 (+)
G8375 cbl non-coding upstream 63096 50148884 ~ 50149121 (+)
G8374 NA non-coding upstream 64022 50147876 ~ 50148195 (+)
G8373 NA non-coding upstream 66394 50145371 ~ 50145823 (+)
G8443 NA non-coding downstream 69871 50284425 ~ 50288071 (+)
G8509 NA non-coding downstream 480670 50695224 ~ 50695567 (+)
G8538 NA non-coding downstream 544521 50759075 ~ 50759360 (+)
G8596 NA non-coding downstream 756402 50970956 ~ 50971302 (+)
G8605 NA non-coding downstream 900026 51114580 ~ 51114852 (+)
G8377 NA other upstream 54498 50151264 ~ 50157719 (+)
AMCG00004449 NA other upstream 260684 49938552 ~ 49951533 (+)
AMCG00004442 NA other upstream 398193 49806361 ~ 49814024 (+)
AMCG00004425 zbtb44,LOC106580932,LOC106612543,LOC102781915 other upstream 893382 49298736 ~ 49318835 (+)
AMCG00004424 NA other upstream 1152162 49043590 ~ 49060055 (+)
AMCG00004463 NA other downstream 22123 50236677 ~ 50243043 (+)
AMCG00004477 NA other downstream 526834 50741388 ~ 50753432 (+)
G8606 NA other downstream 900387 51114941 ~ 51115262 (+)
AMCG00004501 NA other downstream 1724995 51939549 ~ 51946818 (+)
AMCG00004509 NA other downstream 1774799 51989353 ~ 52013630 (+)

Expression


Co-expression Network