AMCG00004474 (ei24,LOC106567936,LOC106603545)


Basic Information

Item Value
gene id AMCG00004474
gene name ei24,LOC106567936,LOC106603545
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 50673093 ~ 50678350 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004474
TCTACAACGTCACCCGTTTCTCTGCTTCTCCAGGGGATTAAGGACTCAATTCTCGGGATCGGGACCATCTCCAAGCTGGACGCCCGCATTCAGCAGAAAAGGGAAGAGCAAAGGCGGAGACGGGCGAGCGGTGCACTGGCTCAGCGTCGGGCGCAGAGCGAGGAGCGGAAACAGGAGAGCGAACCCAAGCTAGCCAGCCGAATCCTGCAGTGCTGTGCCTGGAATGGAGGCGTGTTCTGGcTCAGTCTGTTTCTTTTCTACCGAGTGTTCATACCACTGCTCCAGACTCTGACGGCAACCATTATCGGTGACCCCTCCCTACATGGTGATGTGTGGTCCTGGCTGGAATTCATTCTGACGTCCGTGTTCAGTGCTCTCTGGGTGCTGCCCCTCTTCGTGCTCAGTAAAATCGTCAACGCCATCTGGTTTCAGGACATCGCAGATCTTGCGTTCGAGGTGTCCGGTCGCAAGGCTCAGCCCTTCCCCAGTGTCAGTAAGATCATCGCAGACATGCTCTTCAACCTCCTGCTGCAAGCTCTCTTCCTCATTCAGGGCATGATAGTCAGCCTCTTCCCCATTGATGTGATTGGCCAGATGATCAGCCTCCTCCACATGTCTCTGCTGTACTCTCTGTACTGCTTCGAGTATCGCTGGTTCAACCATGGGGTTGAGATGCACCAGCGTCTTTCGAATATAGAGAGGAACTGGCCCTATTACTTTGGTTTCGGGTTGCCAATGGCCATGCTCACTGCCCTGCCATCCTCGTACATTATCAGTGGGTGCCTGTTTTCAATCCTGTTCCCTCTCTTCATCATCAGTGCAAATGAGGCCAAGACCCCGGTTAAACTTTACCACTTTCAGCTGCGTCTCTTCTCCCTGGTGGTGCTCATCAGCAACAAACTGTTCCACAAGACCGTGCACCTGCAGTCCTCGCTCACGGCCTCGGCGTCCTGCGAGAGGCTGCCCTCACCGCACGCCTCCCCGGCCCGCCAGCGCCCCCCGCCAGCACAGTGA

Function

symbol description
ei24 Predicted to be involved in macroautophagy. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Orthologous to human EI24 (EI24 autophagy associated transmembrane protein).

NR:

description
PREDICTED: etoposide-induced protein 2.4 homolog isoform X2

GO: NA

KEGG:

id description
K10134 EI24; etoposide-induced 2.4 mRNA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004474 True 1014 mRNA 0.56 9 50673093 50678350

Neighbor

gene id symbol gene type direction distance location
AMCG00004472 ilvbl,LOC107758073,LOC107670636 coding upstream 2508 50661462 ~ 50670585 (+)
AMCG00004473 LOC100709321,LOC106581230,LOC102786114,LOC104941976 coding upstream 42328 50620979 ~ 50630765 (+)
AMCG00004469 tbrg1 coding upstream 391518 50272542 ~ 50281575 (+)
AMCG00004468 NA coding upstream 407646 50258831 ~ 50265447 (+)
AMCG00004464 rps25,LOC107758587,LOC107583381,LOC107679519,LOC107565279 coding upstream 458539 50212217 ~ 50214554 (+)
AMCG00004476 stt3a coding downstream 5454 50683804 ~ 50689885 (+)
AMCG00004479 fam118b coding downstream 20204 50698554 ~ 50709129 (+)
AMCG00004478 NA coding downstream 43675 50722025 ~ 50732800 (+)
AMCG00004482 LOC106612963 coding downstream 109681 50788031 ~ 50792555 (+)
AMCG00004485 NA coding downstream 170724 50849074 ~ 50850195 (+)
G8443 NA non-coding upstream 385022 50284425 ~ 50288071 (+)
G8380 cbl,LOC102793573 non-coding upstream 501142 50171520 ~ 50171951 (+)
G8376 NA non-coding upstream 523551 50149325 ~ 50149542 (+)
G8375 cbl non-coding upstream 523972 50148884 ~ 50149121 (+)
G8374 NA non-coding upstream 524898 50147876 ~ 50148195 (+)
G8509 NA non-coding downstream 16874 50695224 ~ 50695567 (+)
G8538 NA non-coding downstream 80725 50759075 ~ 50759360 (+)
G8596 NA non-coding downstream 292606 50970956 ~ 50971302 (+)
G8605 NA non-coding downstream 436230 51114580 ~ 51114852 (+)
G8658 NA non-coding downstream 967499 51645849 ~ 51663424 (+)
AMCG00004463 NA other upstream 430050 50236677 ~ 50243043 (+)
G8377 NA other upstream 515374 50151264 ~ 50157719 (+)
AMCG00004449 NA other upstream 721560 49938552 ~ 49951533 (+)
AMCG00004442 NA other upstream 859069 49806361 ~ 49814024 (+)
AMCG00004425 zbtb44,LOC106580932,LOC106612543,LOC102781915 other upstream 1354258 49298736 ~ 49318835 (+)
AMCG00004477 NA other downstream 63038 50741388 ~ 50753432 (+)
G8606 NA other downstream 436591 51114941 ~ 51115262 (+)
AMCG00004501 NA other downstream 1261199 51939549 ~ 51946818 (+)
AMCG00004509 NA other downstream 1311003 51989353 ~ 52013630 (+)
G9012 NA other downstream 2505044 53183394 ~ 53183983 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location