AMCG00004477


Basic Information

Item Value
gene id AMCG00004477
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 50741388 ~ 50753432 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004477
ATGATTGCCAGCCCAATGGGGTGGTTCACACGCATCTTAAACAGACGCAAGCACGAAAGCACTCTGGTCTCCTCAACGCACATTACCTCCCCCAGGGGacctctcccttcctcctctcGTTCCGTCTCTTCAGCCTCCTTGTCCTCGTCCTCCTACTCTGTCACTCCGGTGCCTGACCTGAGGTGCGGCGCTCGCTGGAGCAGGGACTACGACGTGTGCGTCTGCCACAGTGATGCCGATTTCTGCGAGGCGCAGCTCCTTGTCTCGTACCTTGAAGCACAAGAACACAATCTTCGTTGCTTCTTTCAGCTGCGGGACTCGGCCCCAGGGGGCGCTATCTCCACAGAACTCTGCCAGGCTATACACAGGAGCCACTGCTGGGCTCTGCTCATTACAAGCAGCTTCCTGCTGGACCCCTGGTGCAGGTACCAAATGCATCAGGCGCTGGCTGAGGCACCCATGGCCAACGGAAGGATAATTCCCATCATGCTTCAGCTCCCACGCTCGGACTACCCTAAAGAGCTGCGCTTCTACTACTTCATTGACATCACCGCTGCCCGTGAGCGGGGTTACAGTTTGGTGCACAAGGCAGTGCTGAACTACTTGGTGGAGCTGTGTAAAAAGGACAGTGCTGCTCGCAGTAGTATGTCCGAGACTGCGGCAGCAGAAGGGGACTCCATGGACTCGGAGCGCTCCCTCACGGACAGCAGAGAATCGAGTGCTACTCTGtccaccacacagacacacccgaCACCGGTGCCCAGACCTGTCACAGATTCGGAAGTCATTCGGATGTCGGAGCTGCAGCGATGCCAGGGGAAAGGCCCGGACAGCAATGCATCAGAGAACGGGAGCACTACGGTGTGCTCGTCCGGGGACAACGATAGCCTGGACTGGCCGAACAAAAAGCCCCGCACCGCAGAGGCCGGGGCTGGAGCTGCGGATGGCGGGTTTGCATTGTCCAGCTTCCGAGCAGAAAAGATCTTGCGGGAGTCCGCCCGGGAGAAAAGCATCTTCATCCACGGAAAGATGGGGCAGGACGGCGAGGAGGAGCAGAATGCTGTGGTCATCCTTGAGAAGACCCCCATCAGAGAGGACACCCTTCCCGAGCTTTTCAAGAACTCCCAACTGCAGCTGGACATGAGAAACAATATCTATAGCACCTACCATCTCCAGCCCCCGGTCCATCTCAACGAGATGAAGGCAACAGTGGTGTGTCCAGCTACAGAGAAGCACGTTAAGAAGTACCTGCGACAGGAGATGTTTCTCATCCATGAGACCGGGGAGGACTATCGAAGCATCACCTTGCCCTACATCCAGAGTCAGAGCTTCAGTGTGCAGTGGGTTTACAACATATTGGAGAAGAAAGCAGAAGCCGATAGGATTGTCTTTGAAGATCCAGATAAGGACACTGGCTTCATCCTGCTTCCAGACTTTAAATGGGACCAGAAGCAGCTGGATGATTTGTACCTGATTGCCATCGTTCACCGGCGGGACATCAAGAGCCTGCGGGACCTCACTGCGGAGCACCTGCCTCTGCTGCAGAACATCCAGAAACGCGGAGAGGAAGCCATCCTGAAGAAGTACAATGTTCCTCGCAACAAGCTGCGCGTTTATCTGCACTACCAGCCCTCTTACTACCACCTCCACGTCCACTTCACCTCCCTGGGGTACGAGGCCCCGGGCTGTGGGGTTGAGAAGGCCCATTTGCTCTCGGACGTCCTGCTGAACCTGCTGGCGGAGCCCGGGTACTACGGCTCCCGCACCCTGCCCTTCCCCCTGCGTGCGGACGACAGCCTGCTGCAGAAATTCAAGGATGCAGAGAGACTGTAGCCGCGTGGCCCACCCATGCAATCCAGAACCAACACATCATccttttgtacttttttaacgtggtctgtttttttgttttttgttggttctcttttataaaataaagttttttgattcaattcagttttctttttggaaaaacaaaaaattgtggattgatttgatattttag
>TU10527
tggcGGACCGCAGGAGGCCGAGCAGGGACGGTGAAAATGACACAAAAGCGTCCGGGGACAACGATAGCCTGGACTGGCCGAACAAAAAGCCCCGCACCGCAGAGGCCGGGGCTGGAGCTGCGGATGGCGGGTTTGCATTGTCCAGCTTCCGAGCAGAAAAGATCTTGCGGGAGTCCGCCCGGGAGAAAAGCATCTTCATCCACGGAAAGATGGGGCAGGACGGCGAGGAGGAGCAGAATGCTGTGGTCATCCTTGAGAAGACCCCCATCAGAGAGGACACCCTTCCCGAGCTTTTCAAGAACTCCCAACTGCAGCTGGACATGAGAAACAATATCTATAGCACCTACCATCTCCAGCCCCCGGTCCATCTCAACGTGGGTTTACAACATATTGGAGAAGAAAGCAGAAGCCGATAGGATTGTCTTTGAAGATCCAGATAAGGACACTGGCTTCATCCTGCTTCCAGACTTTAAATGGGACCAGAAGCAGCTGGATGATTTGTACCTGATTGCCATCGTTCACCGGCGGGACATCAAGAGCCTGCGGGACCTCACTGCGGAGCACCTGCCTCTGCTGCAGAACATCCAGAAACGCGGAGAGGAAGCCATCCTGAAGAAGTACAATGTTCCTCGCAACAAGCTGCGCGTTTATCTGCACTACCAGCCCTCTTACTACCACCTCCACGTCCACTTCACCTCCCTGGGGTACGAGGCCCCGGGCTGTGGGGTTGAGAAGGCCCATTTGCTCTCGGACGTCCTGCTGAACCTGCTGGCGGAGCCCGGGTACTACGGCTCCCGCACCCTGCCCTTCCCCCTGCGTGCGGACGACAGCCTGCTGCAGAAATTCAAGGATGCAGAGAGACTGTAGCCGCGTGGCCCACCCATGCAATCCAGAACCAACACATCATccttttgtacttttttaacgtggtctgtttttttgttttttgttggttc

Function

GO:

id name namespace
GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA biological_process
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K12584 DCPS, DCS; m7GpppX diphosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004477 True 2005 mRNA 0.55 9 50741388 50753432
TU10527 False 956 TUCP 0.56 5 50743791 50753349

Neighbor

gene id symbol gene type direction distance location
AMCG00004478 NA coding upstream 8588 50722025 ~ 50732800 (+)
AMCG00004479 fam118b coding upstream 32259 50698554 ~ 50709129 (+)
AMCG00004476 stt3a coding upstream 51503 50683804 ~ 50689885 (+)
AMCG00004474 ei24,LOC106567936,LOC106603545 coding upstream 63038 50673093 ~ 50678350 (+)
AMCG00004472 ilvbl,LOC107758073,LOC107670636 coding upstream 70803 50661462 ~ 50670585 (+)
AMCG00004482 LOC106612963 coding downstream 34599 50788031 ~ 50792555 (+)
AMCG00004485 NA coding downstream 95642 50849074 ~ 50850195 (+)
AMCG00004486 ets1,LOC106612966 coding downstream 184581 50938013 ~ 50948526 (+)
AMCG00004489 LOC108434141,LOC103024239 coding downstream 566425 51319857 ~ 51326045 (+)
AMCG00004488 LOC106612967,LOC106581099 coding downstream 608308 51361740 ~ 51390889 (+)
G8509 NA non-coding upstream 45821 50695224 ~ 50695567 (+)
G8443 NA non-coding upstream 453317 50284425 ~ 50288071 (+)
G8380 cbl,LOC102793573 non-coding upstream 569437 50171520 ~ 50171951 (+)
G8376 NA non-coding upstream 591846 50149325 ~ 50149542 (+)
G8375 cbl non-coding upstream 592267 50148884 ~ 50149121 (+)
G8538 NA non-coding downstream 5643 50759075 ~ 50759360 (+)
G8596 NA non-coding downstream 217524 50970956 ~ 50971302 (+)
G8605 NA non-coding downstream 361148 51114580 ~ 51114852 (+)
G8658 NA non-coding downstream 892417 51645849 ~ 51663424 (+)
G8764 NA non-coding downstream 1337453 52090885 ~ 52091291 (+)
AMCG00004463 NA other upstream 498345 50236677 ~ 50243043 (+)
G8377 NA other upstream 583669 50151264 ~ 50157719 (+)
AMCG00004449 NA other upstream 789855 49938552 ~ 49951533 (+)
AMCG00004442 NA other upstream 927364 49806361 ~ 49814024 (+)
AMCG00004425 zbtb44,LOC106580932,LOC106612543,LOC102781915 other upstream 1422553 49298736 ~ 49318835 (+)
G8606 NA other downstream 361509 51114941 ~ 51115262 (+)
AMCG00004501 NA other downstream 1186117 51939549 ~ 51946818 (+)
AMCG00004509 NA other downstream 1235921 51989353 ~ 52013630 (+)
G9012 NA other downstream 2429962 53183394 ~ 53183983 (+)
AMCG00004546 dixdc1,LOC107715327,LOC107693513 other downstream 2505747 53259179 ~ 53270254 (+)

Expression


Co-expression Network