AMCG00004482 (LOC106612963)


Basic Information

Item Value
gene id AMCG00004482
gene name LOC106612963
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 50788031 ~ 50792555 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004482
ATGCCAGAGAGTGTTGAAAGTCTGGACTGTAGGAGGTGTGCGGTCATTGGAAATGGATTCGCCATTAAAAACAGGTCCTTGGGCGGTGCCATCAACAAGTATGACATTGTGATCAGGTTGAACGATGCCCCGGTGAGAGGCTACGAGGACGACGTGGGCAATAAGACCACCATGAGGCTCTTCTACCCGGAATCGGCCTTGCTCGACCCGGGCATCCACAACGACCCCGACACGCTCATGGTCCTGATTCCTTTTAAACGGGAGGACCTGCGCTGGCTAAAGGAGATCCTTTATGACGAGAAGAGGGTAAGAAAAGGCTTCTGGAGACCTCCTCCTCAGATCTGGCAGGGCAAAACCAGCCAAGTCCGTGTCCTGGACCCCTTCTTCCTCCAAGAGACGGCAACCAAACTGCTCAATATTCCACTGACTTTGCCACCCAAGAGCAAACAGAAGCCAGTGCACCCGACCACTGGGATTTTAGCCATATATATGGCCCTTAGTTATTGTGATGTGGTGCACATAGCAGGGTTTGGATACCCCCCAACTTCAGACCAGAAGCATCCTATTCACTACTATGGTTACGATACTATGAAATCCATGAAGTTCCTCACCTCGGACTGCAGGGTGAGCCAGAATGCATAG

Function

NR:

description
PREDICTED: CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4-like isoform X2

GO: NA

KEGG:

id description
K03494 SIAT4C; beta-galactoside alpha-2,3-sialyltransferase (sialyltransferase 4C)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004482 True 642 mRNA 0.52 6 50788031 50792555

Neighbor

gene id symbol gene type direction distance location
AMCG00004478 NA coding upstream 55231 50722025 ~ 50732800 (+)
AMCG00004479 fam118b coding upstream 78902 50698554 ~ 50709129 (+)
AMCG00004476 stt3a coding upstream 98146 50683804 ~ 50689885 (+)
AMCG00004474 ei24,LOC106567936,LOC106603545 coding upstream 109681 50673093 ~ 50678350 (+)
AMCG00004472 ilvbl,LOC107758073,LOC107670636 coding upstream 117446 50661462 ~ 50670585 (+)
AMCG00004485 NA coding downstream 56519 50849074 ~ 50850195 (+)
AMCG00004486 ets1,LOC106612966 coding downstream 145458 50938013 ~ 50948526 (+)
AMCG00004489 LOC108434141,LOC103024239 coding downstream 527302 51319857 ~ 51326045 (+)
AMCG00004488 LOC106612967,LOC106581099 coding downstream 569185 51361740 ~ 51390889 (+)
AMCG00004490 rexo2 coding downstream 716900 51509455 ~ 51513615 (+)
G8538 NA non-coding upstream 28671 50759075 ~ 50759360 (+)
G8509 NA non-coding upstream 92464 50695224 ~ 50695567 (+)
G8443 NA non-coding upstream 499960 50284425 ~ 50288071 (+)
G8380 cbl,LOC102793573 non-coding upstream 616080 50171520 ~ 50171951 (+)
G8376 NA non-coding upstream 638489 50149325 ~ 50149542 (+)
G8596 NA non-coding downstream 178401 50970956 ~ 50971302 (+)
G8605 NA non-coding downstream 322025 51114580 ~ 51114852 (+)
G8658 NA non-coding downstream 853294 51645849 ~ 51663424 (+)
G8764 NA non-coding downstream 1298330 52090885 ~ 52091291 (+)
G8775 NA non-coding downstream 1375761 52168316 ~ 52168540 (+)
AMCG00004477 NA other upstream 34599 50741388 ~ 50753432 (+)
AMCG00004463 NA other upstream 544988 50236677 ~ 50243043 (+)
G8377 NA other upstream 630312 50151264 ~ 50157719 (+)
AMCG00004449 NA other upstream 836498 49938552 ~ 49951533 (+)
AMCG00004442 NA other upstream 974007 49806361 ~ 49814024 (+)
G8606 NA other downstream 322386 51114941 ~ 51115262 (+)
AMCG00004501 NA other downstream 1146994 51939549 ~ 51946818 (+)
AMCG00004509 NA other downstream 1196798 51989353 ~ 52013630 (+)
G9012 NA other downstream 2390839 53183394 ~ 53183983 (+)
AMCG00004546 dixdc1,LOC107715327,LOC107693513 other downstream 2466624 53259179 ~ 53270254 (+)

Expression


Co-expression Network