G8443


Basic Information

Item Value
gene id G8443
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 50284425 ~ 50288071 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU10416
CTGGAACGCTACATGATTTTTGGCATTTTTCAGGGGCTGAACAAAGGCCCATGGACAATCTGTTGAGTTTAATGGGCTCACCTGTGTTTGGGCTTTGCTAGGCCACACGTTTGCAGAGCCCTCTCTGAGGACCAAGCCTCTACAGGCGTACCTCCCCAGCATGACTCCACCAGCCCCACTGGATGCCTTCGGCTCTCGTACAGGTAGCGTCCAAAGAGCCAGCACACCGCTGAGAAGTGCGTGAAGTTCCCTCCACCCAGCACTCCTgccagagaagagaaaaactaGATGCTTTCAGTCATTCAGTGAGGTAAAATGTGTCAGTTATATGCAGAGAAAATAAGGAAGGACAGGTGgaaagcacaaaaacacaaactgtagCACATTTCAAACCTATATAACATTTGTTCCCTAGCAACTTCACCTTCATGgtaaaatgaagaaatattaATTGCATCTGATCTGACTAGTTTTACAACCAGCAGCTCAAAATAAAGAGAGAACAATACCTTACAGCCAATTGTACATTTCCCCTGGGCCCGATACCTGCAGAAGGGAGAGTCCAGACCAATTCAACTCTCGGCAGGTCGGTGAGCTCCATATCGCTCATCTCTAGAGCTGCGGTGAAGACTCTCACGGTGGGATATTTTGTCAAATCAGACAACTCTTCAGAAGCATTCATCACCTTGGGAGgtaggaaaaaagaaaaaatgttatttaagcTACAAATGAATTGACTCCTCCGAATAAAGCAAGAGTCACCCAATCCAGCTCATATTGATAGTCAACTTGAAATTGAACCAAGCAGCAagagaattaaatcaaaataaatctcttgGCTTTGGCATTTCTCACTGTGACTTTGTGATAAGTATTGAATTTGCAATCCGAGCCTAAACCTGAAGCAGTGTCATCTCCATGTTGCTCTGTCCCCCACACAGCCACACGTCTCCGAAGAGCACGTCTGTCAGATTTCGGACTTGGACACCCTCTGCACTCTGCTGGACGGCACGTAGGAGtgacagtgtgtgatgTGTTCTGCTGGATGCCCAGCACAGTGATGGTGACCTTCGCTGCATTGGTCCCATAGCCCCACAGCACCGCGCGCTCCGGGGCTCTCTGCAGGACCATGTGGTCCCCATAGTAAGAGGCAAAGCGGAATTCGTGTCCTGCAAAATGAAGAGCATGTTAAAATACAAGAGAACACCCGTGGTCTGATATCttggtattatttcagtattagaacataagaacatcagaaagtgtccaatcgagaggaggccattcgccccattgtgctcgtttggtgtccattaataactaagtgatccaaggatcctatccagtctatttttaaatgttcccaaattgtctcttcagccacatcgctggggagtttgttcagattgtgacgcctctctgtgtgaagaagtgtctcccgttttctgtcttgaatgccttgaagcccaatttccatctgtgtccccgggtgcattgCTGCTGGTCCATCTGGTTTgatggaaaagctcctctggttagAAAATCATCATTGCAGTTGATTTTAAAGTGACACAAATACTGATTTGCTTTGCTGTGTCCAAAAAGACACACGCAAGGAAGGGGATCTTCCAGGTGTCATTTCGTGTTAGTCATGCGAGTGTCTTGTGACCGCAGCGTCACGTGTCAGCAGCCTGTGTCCGCACTGGGGAAGTTACTTTAACCACAGCCTGCTCGGCTTTGTATTAAGACGATTTTGGCGAACATATGCACTTATTAAAACGATATGCTATGTAATTCTAAGCTCACATCTGAGGCCTAATAAAGTTGTATCTTTAACGATACTGCGTTTTCATAAGGGCAGCGAGTGGACGTCATTAATATGCAAAGTCGGAATTGACTGGatctgtatttttctgtgtgcAAATAAGGTGATATCTGTAACTGATCCCAGTAAAAATATCTTAATATCAGTAACACATGTATGTACTCACCGAGCCCATACGAGTGGgctacacaacacaacagcagcagcggGTGCAAGCCATGCATCTTCTTGTTGCTTCAGACAGACCCGGAGCGGCTCCGTGGTTTTATCCCGGTGCAGGACACCCGCAGCCCGTCGGCGCAGGCGAGCTCGCCGGCCAGCCCCGGCTCCCCCGGC

Function

NR:

description
uncharacterized protein LOC110506706

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU10416 True 2161 lncRNA 0.47 3 50284425 50288071

Neighbor

gene id symbol gene type direction distance location
AMCG00004469 tbrg1 coding upstream 2850 50272542 ~ 50281575 (+)
AMCG00004468 NA coding upstream 18978 50258831 ~ 50265447 (+)
AMCG00004464 rps25,LOC107758587,LOC107583381,LOC107679519,LOC107565279 coding upstream 69871 50212217 ~ 50214554 (+)
AMCG00004462 slc37a4,LOC106612980,LOC107670393,LOC107593481 coding upstream 72235 50199505 ~ 50212190 (+)
AMCG00004459 NA coding upstream 96932 50184702 ~ 50187493 (+)
AMCG00004473 LOC100709321,LOC106581230,LOC102786114,LOC104941976 coding downstream 332908 50620979 ~ 50630765 (+)
AMCG00004472 ilvbl,LOC107758073,LOC107670636 coding downstream 373391 50661462 ~ 50670585 (+)
AMCG00004474 ei24,LOC106567936,LOC106603545 coding downstream 385022 50673093 ~ 50678350 (+)
AMCG00004476 stt3a coding downstream 395733 50683804 ~ 50689885 (+)
AMCG00004479 fam118b coding downstream 410483 50698554 ~ 50709129 (+)
G8380 cbl,LOC102793573 non-coding upstream 112474 50171520 ~ 50171951 (+)
G8376 NA non-coding upstream 134883 50149325 ~ 50149542 (+)
G8375 cbl non-coding upstream 135304 50148884 ~ 50149121 (+)
G8374 NA non-coding upstream 136230 50147876 ~ 50148195 (+)
G8373 NA non-coding upstream 138602 50145371 ~ 50145823 (+)
G8509 NA non-coding downstream 407153 50695224 ~ 50695567 (+)
G8538 NA non-coding downstream 471004 50759075 ~ 50759360 (+)
G8596 NA non-coding downstream 682885 50970956 ~ 50971302 (+)
G8605 NA non-coding downstream 826509 51114580 ~ 51114852 (+)
G8658 NA non-coding downstream 1357778 51645849 ~ 51663424 (+)
AMCG00004463 NA other upstream 41382 50236677 ~ 50243043 (+)
G8377 NA other upstream 126706 50151264 ~ 50157719 (+)
AMCG00004449 NA other upstream 332892 49938552 ~ 49951533 (+)
AMCG00004442 NA other upstream 470401 49806361 ~ 49814024 (+)
AMCG00004425 zbtb44,LOC106580932,LOC106612543,LOC102781915 other upstream 965590 49298736 ~ 49318835 (+)
AMCG00004477 NA other downstream 453317 50741388 ~ 50753432 (+)
G8606 NA other downstream 826870 51114941 ~ 51115262 (+)
AMCG00004501 NA other downstream 1651478 51939549 ~ 51946818 (+)
AMCG00004509 NA other downstream 1701282 51989353 ~ 52013630 (+)
G9012 NA other downstream 2895323 53183394 ~ 53183983 (+)

Expression


Co-expression Network