G8541


Basic Information

Item Value
gene id G8541
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 50721179 ~ 50722312 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU10540
ATTTTAAGCTCAGTTTAATTTTGACCATAAAAGGGGATCCAAGTGCCCAGCGTGGCGGCCGCAACTCACTGTGGGGTCtttctccaccaccaccacgcGCACCCCTCCTCGtatcttctctttcttcttcaacCAGTAGGCGACCGACCATCCCACCACCCCACCGCCCACGATCACCACGTCGGCTCGCTCCGGGGGGAGGCCAGGGGTCAGCTCTAGAGGGCTCCAGGCGCTGCCGGGCAGCACCGCCTTGGTCTTGACACGGAACGCCTTCAGCTGCGACTCCAGATCTGCAACGGTCAAATTAAAACGAGTGGAAGAAAACACTCAGACCCATTTGACCCCTCCTCGtatcttctccttcttcttcaaCCAGTAGGCGACCGACCATCCCACCACCCCACCACCCACGATCACCCATTTGACTTCAGGGCTGGACTCCAAAATCCAGCCCTGAAGtggcacaaaatatattaaaagccTTCTAGTTTAAATTTTCCTTGACTGTAAGGGTGTTGCGCAAACATACCTGAAAGTAATAAAAGTCAATACAAGGGTTAAGAGATAAACTTAGATGCAATACTTTAGGTGTCTTATGCAACCAAGgtggtttaatttttaatctcTCTCATTAATTCAACACAGGCTGAAGACAAACTGTAAATTAAAGAGAAATACTCACTGTGTACAATGAGCAACACAATTCTACTCAACAAAAGTACTTACTGTAATACAACAGTGCATTCACAAAGTCAGTGGAACAAAACCTCTACGGATTGTGGCACCTCTTTAACACCAAGCAAGGCTGGACAAACGTCACATATTCCAATCTATTCCACTGCAGGCCTTTGTATGAACCAGCtccattattaattaatcagcAGTAAGTGAGACAATTGTGTCACAGTATTAATTGAATGCAACAAATGCTACTAGACTGCCCCTGCATAAGACAGGCACACACACCAGGGCAGGATTTCACAGTTTAACAGCGGTGGGAGTccattaaaaagtacattccAGATTGATAGTTAACTCACAGATCAGTGTATTCGTTGTAACTAGTGTAATATAGCGACTAGGcttccaaaataaaattatgactGGACTCATGTCTGACTTCTCAGCTGTTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU10540 True 1134 lncRNA 0.46 1 50721179 50722312

Neighbor

gene id symbol gene type direction distance location
AMCG00004475 NA coding downstream 60843 50640186 ~ 50660336 (-)
AMCG00004471 NA coding downstream 430440 50289942 ~ 50290739 (-)
AMCG00004470 NA coding downstream 435191 50281745 ~ 50285988 (-)
AMCG00004466 NA coding downstream 486836 50231274 ~ 50234343 (-)
AMCG00004465 NA coding downstream 523532 50188692 ~ 50197647 (-)
AMCG00004483 kcnj5,LOC107725067,LOC107709561,LOC107558569,LOC106581095 coding upstream 93410 50815722 ~ 50838107 (-)
AMCG00004484 fli1,LOC106612965,LOC103145351 coding upstream 135634 50857946 ~ 50878635 (-)
AMCG00004487 LOC100136491 coding upstream 299026 51021338 ~ 51025994 (-)
AMCG00004492 NA coding upstream 756478 51478790 ~ 51484432 (-)
AMCG00004491 LOC100195238 coding upstream 782156 51504468 ~ 51508828 (-)
G8524 NA non-coding downstream 26376 50694574 ~ 50694803 (-)
G8505 NA non-coding downstream 39217 50681630 ~ 50681962 (-)
G8500 NA non-coding downstream 46626 50668946 ~ 50674553 (-)
G8370 NA non-coding downstream 585448 50127772 ~ 50135731 (-)
G8350 NA non-coding downstream 682824 50033396 ~ 50038355 (-)
G8550 NA non-coding upstream 26706 50749018 ~ 50752724 (-)
G8552 NA non-coding upstream 33081 50755393 ~ 50756726 (-)
G8601 NA non-coding upstream 288506 51010818 ~ 51011143 (-)
G8707 NA non-coding upstream 1124600 51846912 ~ 51880156 (-)
G8758 NA non-coding upstream 1336424 52058736 ~ 52059501 (-)
AMCG00004480 LOC107565095,LOC104942062,LOC107576893 other downstream 254 50710839 ~ 50720925 (-)
G8501 NA other downstream 47804 50671066 ~ 50673375 (-)
AMCG00004467 trappc4,LOC106612982,LOC107561742 other downstream 495353 50209983 ~ 50225826 (-)
AMCG00004457 rnf26 other downstream 649238 50066398 ~ 50071941 (-)
G8340 NA other downstream 712485 50005132 ~ 50008694 (-)
G8542 foxred1 other upstream 1555 50723867 ~ 50725353 (-)
AMCG00004481 NA other upstream 8651 50730963 ~ 50738516 (-)
AMCG00004505 NA other upstream 1220381 51942693 ~ 51954532 (-)
G8760 NA other upstream 1343214 52065526 ~ 52065882 (-)
G8761 NA other upstream 1345741 52068053 ~ 52071586 (-)

Expression


Co-expression Network