G8550


Basic Information

Item Value
gene id G8550
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 50749018 ~ 50752724 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU10560
ATCTTGATGGTGCTGGGCCACCAACAGGGCGCTCCCTCACTCGTGGAGACTTCCAGCCAAGAGTCAAGACCTTAAAACTCTCTCTGCAAGCTGGACTATCAGCTTCATAGGAAGGCGACACAATATCAGACCAGTTCTCCAAAGGTGACAGAGTGTGCGAGTTGGACTAATTATTTTCACGAGTTGGATTTAACGCGATCGATTGCATTGCTTACACCACAAGTGCAGGCTCGTTCCACGTTTCTTTCATTCTAGACCTGTAAGTTACGTGCATCCGAGGACCACGGTCAAGGCCGCTCACCTCTCCGCGTTTCTGGATGTTCTGCAGCAGAGGCAGGTGCTCCGCAGTGAGGTCCCGCAGGCTCTTGATGTCCCGCCGGTGAACGATGGCAATCAGGAGGCAGGGCATAAAAGAGGAGAAACAATGCCCCTCCAGAGAGCTGGTGGAGGGGGGACTGACCTGCACACTGAAGCTCTGACTCTGGATGTAGGGCAAGGTGATGCTTCGATAGTCCTCCCCGGTCTCATGGATGAGAAACATCTCCTGTCGCAGGTACTTCTTAACGTGCTTCTCTGTAGCTGGACACACCACTGTTGCCTTCATCTCTGCGGTTGAAGAAAGACGGTCAGGAGTCAGAAGGGTCAATAAGGCCAAGATACTTATTGAGTTTAGCTGTGTAcctcttctttttaatttgtgaagaaTATATCTTAATCAGAGACCATACATTATAAACTAATATAAATGACTTGCCTCTCAATAAGTCTACGGGCCAGTTGCTTGGCCAGATGGCAAAGGGCGTCTACAATGAAATTGGAGCCAATATGATTTCTTGTGCAGCTCTTCACCAAACACTTCTGTTTATGCCGATTTAAATCATCTTCTAACCAGAGCAGCCAGGGGATGGTTTTGTGGCGACAAGGAAGATCTCCTTTTCTAATTCTTTTCATCTCATTTGAAGGGTTAAAACTGAAACCTCTCCCCCACTCAGACAAAACATCTCTACTCAGTACAAGGAATGTGAAACCGTTGCGGGGCGGTGATGTTAAGATTGCGGATGCCAATGCTTAGCGCTTCAGAAATAAGTTCTTATCAGCACTTGTGCTCGTTTGTGTTGCTGTCATCAGTAATAAGCAATGAATTACTTTTTATCACCTTTTCCTTTCTGGCAATTATAAAatttgaatctttttttttttcctactcaTAAATTGTCCCATACAATCCCGACTCCCCAGTCCTCCACACTGGATGCTGAAAACTCAGGGGGCAGGTATTTGTTATCTTTGTAATAAATTGCTCGCTATGCAGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU10560 True 1314 lncRNA 0.53 2 50749018 50752724

Neighbor

gene id symbol gene type direction distance location
AMCG00004475 NA coding downstream 88682 50640186 ~ 50660336 (-)
AMCG00004471 NA coding downstream 458279 50289942 ~ 50290739 (-)
AMCG00004470 NA coding downstream 463030 50281745 ~ 50285988 (-)
AMCG00004466 NA coding downstream 514675 50231274 ~ 50234343 (-)
AMCG00004465 NA coding downstream 551371 50188692 ~ 50197647 (-)
AMCG00004483 kcnj5,LOC107725067,LOC107709561,LOC107558569,LOC106581095 coding upstream 62998 50815722 ~ 50838107 (-)
AMCG00004484 fli1,LOC106612965,LOC103145351 coding upstream 105222 50857946 ~ 50878635 (-)
AMCG00004487 LOC100136491 coding upstream 268614 51021338 ~ 51025994 (-)
AMCG00004492 NA coding upstream 726066 51478790 ~ 51484432 (-)
AMCG00004491 LOC100195238 coding upstream 751744 51504468 ~ 51508828 (-)
G8541 NA non-coding downstream 26706 50721179 ~ 50722312 (-)
G8524 NA non-coding downstream 54215 50694574 ~ 50694803 (-)
G8505 NA non-coding downstream 67056 50681630 ~ 50681962 (-)
G8500 NA non-coding downstream 74465 50668946 ~ 50674553 (-)
G8370 NA non-coding downstream 613287 50127772 ~ 50135731 (-)
G8552 NA non-coding upstream 2669 50755393 ~ 50756726 (-)
G8601 NA non-coding upstream 258094 51010818 ~ 51011143 (-)
G8707 NA non-coding upstream 1094188 51846912 ~ 51880156 (-)
G8758 NA non-coding upstream 1306012 52058736 ~ 52059501 (-)
G8759 NA non-coding upstream 1310680 52063404 ~ 52065450 (-)
AMCG00004481 NA other downstream 10502 50730963 ~ 50738516 (-)
G8542 foxred1 other downstream 23665 50723867 ~ 50725353 (-)
AMCG00004480 LOC107565095,LOC104942062,LOC107576893 other downstream 28093 50710839 ~ 50720925 (-)
G8501 NA other downstream 75643 50671066 ~ 50673375 (-)
AMCG00004467 trappc4,LOC106612982,LOC107561742 other downstream 523192 50209983 ~ 50225826 (-)
AMCG00004505 NA other upstream 1189969 51942693 ~ 51954532 (-)
G8760 NA other upstream 1312802 52065526 ~ 52065882 (-)
G8761 NA other upstream 1315329 52068053 ~ 52071586 (-)
AMCG00004529 bco2 other upstream 2097759 52850483 ~ 52874108 (-)
AMCG00004533 NA other upstream 2146035 52898759 ~ 52911752 (-)

Expression


Co-expression Network