G2052 (LOC100846954)


Basic Information

Item Value
gene id G2052
gene name LOC100846954
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 11858921 ~ 11905671 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU2475
ctacgtcgtgaaggactgaaatcctgcagcgcccgcaaggtccccctgctcaagaaagcacatgtacaggcccgtctgaagtttgccaatgaacatctgaatgattcagaggagaactgggtgaaagtgttgtggtcagatgagaccaaaatcgagctctttggcatcaactcaactcgccgtgtttggaggaggaggaatgaccccaagaacaccatccccaccgtcaaacatggaggtggaaacattatgctttgggggaggttttct

Function

NR:

description
transposase-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2475 True 270 lncRNA 0.51 2 11858921 11905671

Neighbor

gene id symbol gene type direction distance location
AMCG00003616 rngtt,LOC107554925,LOC107660510 coding downstream 138181 11707557 ~ 11720740 (-)
AMCG00003617 NA coding downstream 247241 11609163 ~ 11611680 (-)
AMCG00003613 cnr1,LOC104936193 coding downstream 281644 11575865 ~ 11577277 (-)
AMCG00003611 NA coding downstream 290640 11560562 ~ 11568281 (-)
AMCG00003610 NA coding downstream 316276 11528304 ~ 11542645 (-)
AMCG00003627 ube2j1 coding upstream 34823 11940494 ~ 11957654 (-)
AMCG00003626 rragd,LOC107564985,LOC107693082,LOC107583676,LOC108435430,LOC107755772 coding upstream 52901 11958572 ~ 11976961 (-)
AMCG00003629 LOC104963585,LOC104944503 coding upstream 173797 12079468 ~ 12130611 (-)
AMCG00003631 NA coding upstream 250696 12156367 ~ 12176632 (-)
AMCG00003632 NA coding upstream 350798 12256469 ~ 12283492 (-)
G1935 NA non-coding downstream 472867 11381872 ~ 11386054 (-)
G1856 NA non-coding downstream 807843 11050151 ~ 11051078 (-)
G1744 NA non-coding downstream 1443034 10414938 ~ 10415887 (-)
G1631 NA non-coding downstream 2006583 9852069 ~ 9852338 (-)
G1630 prkd3,LOC107098152,LOC106607674 non-coding downstream 2007494 9850691 ~ 9851427 (-)
G2066 NA non-coding upstream 121248 12026919 ~ 12027158 (-)
G2071 NA non-coding upstream 145574 12051245 ~ 12051491 (-)
G2079 NA non-coding upstream 162378 12068049 ~ 12068258 (-)
G2140 NA non-coding upstream 481937 12387608 ~ 12387931 (-)
G2142 NA non-coding upstream 512257 12417928 ~ 12418336 (-)
AMCG00003618 NA other downstream 69646 11743989 ~ 11789275 (-)
AMCG00003595 myo6,LOC106571274 other downstream 742016 11063121 ~ 11116905 (-)
AMCG00003586 NA other downstream 902568 10951084 ~ 10956353 (-)
AMCG00003587 naa20 other downstream 1225809 10625346 ~ 10633112 (-)
AMCG00003573 NA other downstream 1980477 9874670 ~ 9878444 (-)
AMCG00003623 LOC101472980,LOC105894864,LOC108427479,LOC105908251,LOC106571292,LOC105017864 other upstream 16320 11921991 ~ 11939783 (-)
AMCG00003625 NA other upstream 169648 12075319 ~ 12078152 (-)
G2236 NA other upstream 1129282 13034953 ~ 13035489 (-)
AMCG00003652 parp1,xdh,LOC102777090,LOC107603072,LOC104966294 other upstream 1166125 13071796 ~ 13116660 (-)
AMCG00003667 NA other upstream 1759072 13664743 ~ 13732039 (-)

Expression


Co-expression Network