G3690


Basic Information

Item Value
gene id G3690
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 21089595 ~ 21090254 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU4463
ggaaaatgctatgtctggcgcaaacccaacacctctcatcaccccgagaacaccatccctacagtgaagcatggtggtggcagcatcatgctgtggggatgttttttttttgtttgttttttgttttttgttttttttaatcggcagggactgggaaactggtcagaattgaaggaatgatggatggcactaaatacagggaaattcttgagggaaacctgtttcagtcttccagagatttgagactgggatgagggttcaccttccagcaggacaatgaccctaagcatactgctaaagcaacactcgagtgatttaaggggaaacatttaaatgtcttggaatggcctagtcaaagcccagatctcaatccaactgagaatctgtggtgtgacaaaagattgctgtacaccagcggaactttgcatcttcaaagtggtaggcatgttgtgtaaatcaaatgataca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU4463 True 468 lncRNA 0.53 2 21089595 21090254

Neighbor

gene id symbol gene type direction distance location
AMCG00003836 NA coding upstream 756059 20333123 ~ 20333536 (+)
AMCG00003835 NA coding upstream 956240 20132773 ~ 20133355 (+)
AMCG00003833 NA coding upstream 1144578 19944010 ~ 19945017 (+)
AMCG00003832 NA coding upstream 1145758 19933174 ~ 19943837 (+)
AMCG00003827 NA coding upstream 1458148 19630470 ~ 19631447 (+)
AMCG00003844 lama2,LOC107653134 coding downstream 198206 21288460 ~ 21296218 (+)
AMCG00003843 lama2 coding downstream 223820 21314074 ~ 21333224 (+)
AMCG00003845 NA coding downstream 257973 21348227 ~ 21438679 (+)
AMCG00003846 NA coding downstream 349860 21440114 ~ 21447121 (+)
AMCG00003847 NA coding downstream 401630 21491884 ~ 21535758 (+)
G3670 NA non-coding upstream 161793 20925812 ~ 20927802 (+)
G3666 NA non-coding upstream 176607 20912142 ~ 20912988 (+)
G3661 NA non-coding upstream 181078 20903572 ~ 20908517 (+)
G3648 NA non-coding upstream 229301 20835737 ~ 20860294 (+)
G3635 NA non-coding upstream 288449 20777059 ~ 20801146 (+)
G3754 NA non-coding downstream 505602 21595856 ~ 21598430 (+)
G3757 NA non-coding downstream 510378 21600632 ~ 21600860 (+)
G3767 NA non-coding downstream 642237 21732491 ~ 21732699 (+)
G3770 NA non-coding downstream 660273 21750527 ~ 21759799 (+)
G3798 NA non-coding downstream 827022 21917276 ~ 22016452 (+)
AMCG00003828 ctgf,ctgfa,moxd1,LOC106571301,LOC107683930,LOC106571350 other upstream 1691909 19271965 ~ 19397686 (+)
G3108 NA other upstream 2937281 18146660 ~ 18152314 (+)
AMCG00003779 ctsb,catb,LOC107381178 other upstream 2946962 18131919 ~ 18142633 (+)
G3047 NA other upstream 3405607 17681817 ~ 17683988 (+)
AMCG00003744 NA other upstream 4047001 17032570 ~ 17042594 (+)
G3751 NA other downstream 458947 21549201 ~ 21549533 (+)
G3771 NA other downstream 655596 21745850 ~ 21760630 (+)
AMCG00003853 NA other downstream 800269 21890523 ~ 21901865 (+)
G3799 med23 other downstream 832382 21922636 ~ 21923787 (+)
AMCG00003874 NA other downstream 1592762 22683016 ~ 22769227 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G2835 NA non-coding NC_035897.1 CM008300.1 10783148 ~ 10783487 (-)