G3754


Basic Information

Item Value
gene id G3754
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 21595856 ~ 21598430 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU4545
AAAAATCTTAAAACTGTTCACTTTAAAATTAGAATAACAGTTGTTGTCTGCCAAAACCTACATTTCCTGGTTTTCATCCAACTTGACTGATGTCCTGACAGTTTTATCTTAACAGAAACCAACACAAGAAGAGGGTTATATATGACAAGGTCTGTATGCTTTCCCATGATTCACAAGTAGGGTGAGTTGTAGAATTTTGGAGTACAGTTTAGTCTAAAATTTGTTTTGGGAGCATGATatggcagtaaaatccaaacCCAATGCAATAATGCCATACCCatgatttgcattttgtgcAAGAGAATTTATAGATACATGGGGTACAATGCTGTGGAGATGAAATACAGCCACTTAAAGGAAACAGCTGTTTTAGAGGCTTCCTTAGATCCCAATccaataaatgtattaaattaaataattccagcctgtttttatgttttaaaagagcAGAATTATCAATCACCAGTGTCATGGAGCTACTTACTTAACCTATTCAGAGAAGTTGAGAAATGTGGCATCTCAGAATACATTGGCTTTTATAAACCGTGTTACATATTTACCAACATTTCATCTTTTCAATCTGTCATACAATCTCTGGCCATACTGCTGTCAGATCTGTTGATGGTATGagaatgattattatattttaaggtttaaagtttaaagtagaaacatattctgtggagtgagtttttcatgtccagctcattctatttaccagaaatcagagaaaaATATGCCACAACATCATtgggagctgctttgctgggaGTCAATGGAGAAAATCAGATAAGTCatgaaaatcattaaacaaGCATTTTATGCACCTTCGATTGCCcacatcaccctatttttccagAAGATCCAttggtttgtagtcataaaaaatgtatttcaccacccagaactgtcactattattttacatgattattttattcagggGACTTCCGTGTTGGCTACAGCAGAGTGGACAGAGTGGCTCTTTGGACAATGCGCGTGGACAGTTCACACTCTGCTGTAGCCTACACGGCAAtgcataatttttttaatgattcccatgacttttctgattttctccatTGATTCCCAGCAAAGCAGCTCTAGAGTTAGCGCCCCAGTGACGTTACAGTATATttttcgatctctgatttctggtacatagaatgagcttgatatgaaaaactcactccgaAGAATATGTTTCttcttatagaataacctgagaaaatatgaattttcggtggagttccctTTAAGGTTTTGTGACAAAACAGGATCaccactttattttttacttatgtGCTGGTTTTGTCAATCAGAGGAAACAGCAGCTGTATTAATGGGCCAGTGAGAAAgtactgtttatttatgcatacatgtatatatttatacatacatatttattttctcaaccCTTAACAAACTTTCCTATTGTCATCCCTCCAAGACACAGTTAACCTGTTTGCTCTATCTTAAAAGCTCCACTATTTAGATCCTCAATTTCCTGAAGGTGGTTTCCAACTAGGACAGCAAAACCAAGATAAGACTATTTAAAGCTCAGCTGATGGTTACAGTATTCATATGCGGatcagtacatttatttttgacagcTACAATATATATCACAAACGAATggggatgaaaaataaatacattaaatccaaTAAATTAATCTAGGGTAGTAGCTTATAATTTTACATGCAGGTCCAAATGCATTGAGGTAATGCACTCAAGTAGGTCTTTCATTTTCAGGTTACAGTTTAAAAgtaagacaaagaaagaaaggggggcACTTGAAATATCATTAAGGCAGAAATTGTTTTAGTCTTAGGTTTCAGTTTCTACTGCACCTAATATATGTGTCAAGAAAGATCAGGTAACATCaatcacaaataattaaattatgtagattaataatataatatgctGACTGGGCAGTATTGTAAAGTATTGTATTGATTATCCAGATACCAAAAAACCAAGCTTAAAATATTAATCGTGTTAGGGTTTCAGGATGTCAGTGAAGTAAACACCTTGATTACAGGGAATGTCATTGGCTTTCAGTTATCTTTCCTTGTCATTGTTATTCGTCTTTTTAGCAGTTCTGTGTGGAATCAGTGCTCAGGTATCAACAATGTTTACTTGTTGAACCTAAGGTGAGATAAACCATGTAAGTcacatgtaattaatttacattgtttatAACATGCAAATATTGATTCTATTGTTGTGaacacatcaaaaacaaaaaatgtaatgtttcttgtgttttttttttttgtcagctgTATTGTTATGCATTCAAATGGGACATACAAGCAATTCCTGTTTAAAATAGGTCTGTATATTGTACCAGATTTGGCTAGCTATTTTGCTATGGAGCTTTAATTAGTTATATTACATGTGGCTATTTTTGGAAAACGGGAAAACGTAATGTCTAAACAAGATTctcaaataaaatagtaaatcGGTAagtttattcacatttttattatgagaaatgtattacaaatattaaatgtatgtctctatttttttctttttatagaaaacaataaactgtCAACTACAAA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106527262

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU4545 True 2575 lncRNA 0.34 1 21595856 21598430

Neighbor

gene id symbol gene type direction distance location
AMCG00003847 NA coding upstream 60098 21491884 ~ 21535758 (+)
AMCG00003846 NA coding upstream 148735 21440114 ~ 21447121 (+)
AMCG00003845 NA coding upstream 157177 21348227 ~ 21438679 (+)
AMCG00003843 lama2 coding upstream 262632 21314074 ~ 21333224 (+)
AMCG00003844 lama2,LOC107653134 coding upstream 299638 21288460 ~ 21296218 (+)
AMCG00003854 NA coding downstream 259060 21857490 ~ 21862799 (+)
AMCG00003855 NA coding downstream 351901 21950331 ~ 21958985 (+)
AMCG00003856 NA coding downstream 372066 21970496 ~ 21981590 (+)
AMCG00003861 NA coding downstream 502858 22101288 ~ 22106730 (+)
AMCG00003873 NA coding downstream 876657 22475087 ~ 22498055 (+)
G3690 NA non-coding upstream 505602 21089595 ~ 21090254 (+)
G3670 NA non-coding upstream 668054 20925812 ~ 20927802 (+)
G3666 NA non-coding upstream 682868 20912142 ~ 20912988 (+)
G3661 NA non-coding upstream 687339 20903572 ~ 20908517 (+)
G3648 NA non-coding upstream 735562 20835737 ~ 20860294 (+)
G3757 NA non-coding downstream 2202 21600632 ~ 21600860 (+)
G3767 NA non-coding downstream 134061 21732491 ~ 21732699 (+)
G3770 NA non-coding downstream 152097 21750527 ~ 21759799 (+)
G3798 NA non-coding downstream 318846 21917276 ~ 22016452 (+)
G3845 NA non-coding downstream 478562 22076992 ~ 22077458 (+)
G3751 NA other upstream 46323 21549201 ~ 21549533 (+)
AMCG00003828 ctgf,ctgfa,moxd1,LOC106571301,LOC107683930,LOC106571350 other upstream 2198170 19271965 ~ 19397686 (+)
G3108 NA other upstream 3443542 18146660 ~ 18152314 (+)
AMCG00003779 ctsb,catb,LOC107381178 other upstream 3453223 18131919 ~ 18142633 (+)
G3047 NA other upstream 3911868 17681817 ~ 17683988 (+)
G3771 NA other downstream 147420 21745850 ~ 21760630 (+)
AMCG00003853 NA other downstream 292093 21890523 ~ 21901865 (+)
G3799 med23 other downstream 324206 21922636 ~ 21923787 (+)
AMCG00003874 NA other downstream 1084586 22683016 ~ 22769227 (+)
AMCG00003884 NA other downstream 1734171 23332601 ~ 23338241 (+)

Expression


Co-expression Network