AMCG00004913


Basic Information

Item Value
gene id AMCG00004913
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 9411904 ~ 9418523 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004913
ATGGAAGATGTACAGAGGAGAAACAGCCGGTCTCCGAGATCTGGGAGGAAAGGAGGAAAAGCAGCCAAAGCACAGGCAAATATAGAAGTAGCAAAAAGGAGAGAAGTGGTGAAGGAGACTTTAAGGAAGAAACTAGAACAAGAGCAGAGGGCCCTGCACATCGTGGAAAGGCTACTGGAGGACAATGTTGCAGAAGATTTTCTGGTGGATTGTGTAAAGTTCATCACATCTGAAAACTACAAAGACACGGTGGAAGAGAGATCTATTGCCAAGATGTGTGGATACCCTCTCTGTCAGAACAAACTTGTCAATGTTCCTAAACAGCAGTACAGAATTTCAACGAAGACCAATAAGGTGTATGACATCACAGAGCGAAAGTGTTTCTGCAGTAACTTTTGTTACAAAGCATCAAAATACTTTGAAGTCCAGATTCCCAAGATTCCCTTGTGGCTGAGAGAGGAAGAAGGTGGGACCTTGGGAGAGGAGGTGCAGATAGCTGACAAGCCACTATCAGTGTCAGAGATCGAGAATCCCCCCCTGCTGGAGGAGAAGCGCCCTGACTTGCCGTTGTTGGCCACCGAGAGTGACAGCAGCGAGCCCGAGCAAGAGTTCATCTCCAGCATGGTGTCCGCAGGGAGGGTGGGGCCCAGGCACGGAAAGCACCCCCCCACGGATAAGACTGAGCGACACAGGAGTGCACAGGAGAAACCCGGCGGAGGTGtgggggtggtggaggaggccACGGAGCGATTGAGCAAGTGTGTAATAGCCAGCACTGAAGGTCAGGTCACCACCGCTGGTCTACCAGAGCAGGACAACAGTGTGGGGCTGCCTGTAGCGGACAGACGCACAGACCCAGAGCGTGAAACTAAAAATGACACGCCTGAGGACCTGAACATCACGTGCATCGGCGTCAGCAAGAAAGGAGCAGAGGGCCTGAAGGGTCTCCTCGCGAAACACAGGCTGGACCGGGAGGCGCCTCCGTCTGTGGTGAGAAGGAGCCTGCTGGAGACCTTAAGTCGAACGCTGAGCGAATGGAAGACCCAAGAGACACTGCGTTTCCTGTACGGGCCGGACTATAAACCAACAGATTCCGCGGAGGCTTTGGCCCAGCCGGAGGAAGAGCTGGACGAGGACGACCTGGAGGAGTGGGAGGGGGAGTTGGCGGTGGGCGGCTCTGGTCCTGCCTCACGAGGGGCTCGGCCGTCTGCCCCGCTGCCTGACTACCAAGTGCTGAAAAAAGAGACTGAGCTGCTGACCTCAAGGGTCCTGGAGTTTTTCAGAGGGCAGTATGTCTTGCTGGAAGAAGCTGAGCAAAACCCAGGCCTGCAAACTGAGAGCAGTGTGGTGAGTATGAGCCACGATCGCACCCCGGCCACTCTTGTTGCACTGTGGTTCCTGCAGACAGCTGTGGGCAGCACTGTCATGTCCCGGGGCTCTGAGTCTCTGAGACGGATGTCATAG

Function

GO: NA

KEGG:

id description
K20827 RPAP2; RNA polymerase II-associated protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004913 True 1464 mRNA 0.55 7 9411904 9418523

Neighbor

gene id symbol gene type direction distance location
AMCG00004915 NA coding upstream 9697 9399796 ~ 9402207 (+)
AMCG00004914 NA coding upstream 14467 9359900 ~ 9397437 (+)
AMCG00004908 ephx4,LOC106584162 coding upstream 56215 9346848 ~ 9355689 (+)
AMCG00004907 brd3a,brdt,LOC107686882,LOC107675431 coding upstream 68212 9325540 ~ 9343692 (+)
AMCG00004909 NA coding upstream 200425 9201125 ~ 9211479 (+)
AMCG00004918 LOC103464060,LOC101078338,LOC103368809,LOC106584167,LOC101169281 coding downstream 128705 9547228 ~ 9553629 (+)
AMCG00004926 NA coding downstream 164878 9583401 ~ 9593194 (+)
AMCG00004925 NA coding downstream 175498 9594021 ~ 9618789 (+)
AMCG00004927 NA coding downstream 214314 9632837 ~ 9646412 (+)
AMCG00004928 LOC103368644,LOC107091536,LOC106920129,LOC103463988,LOC103139842 coding downstream 228943 9647466 ~ 9651063 (+)
G144141 NA non-coding upstream 238755 9172905 ~ 9173149 (+)
G144139 NA non-coding upstream 241655 9169995 ~ 9170249 (+)
G144137 NA non-coding upstream 266051 9145454 ~ 9145853 (+)
G144136 NA non-coding upstream 270000 9140642 ~ 9141904 (+)
G144111 NA non-coding upstream 559458 8852245 ~ 8852446 (+)
G144195 NA non-coding downstream 25133 9443656 ~ 9443894 (+)
G144210 NA non-coding downstream 29066 9447589 ~ 9448533 (+)
G144218 NA non-coding downstream 45618 9464141 ~ 9466613 (+)
G144227 NA non-coding downstream 75973 9494496 ~ 9500978 (+)
G144237 NA non-coding downstream 135577 9554100 ~ 9557475 (+)
AMCG00004870 rpf1,LOC107745333 other upstream 1677845 7718273 ~ 7734059 (+)
AMCG00004868 samd13 other upstream 1719543 7672816 ~ 7692361 (+)
AMCG00004864 NA other upstream 1787834 7608901 ~ 7624070 (+)
G143626 NA other upstream 3987783 5423703 ~ 5424121 (+)
G143471 LOC107575789 other upstream 5039815 4371709 ~ 4372089 (+)
AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 other downstream 281644 9700167 ~ 9750777 (+)
AMCG00004935 pbx1b,LOC108443834,LOC108272157,LOC106584178,LOC101069707,LOC105011758,LOC106599262 other downstream 529887 9948410 ~ 10015424 (+)
G144677 NA other downstream 2244158 11662681 ~ 11663368 (+)
G144940 NA other downstream 3362057 12780580 ~ 12781170 (+)
AMCG00005060 LOC106599426 other downstream 4736632 14155155 ~ 14188329 (+)

Expression


Co-expression Network