AMCG00005239


Basic Information

Item Value
gene id AMCG00005239
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 19701463 ~ 19704317 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005239
ATGCCGCCCCCGGGGAGCAGTCTCGACCCGTCTCCCGAGCCCAAGCCGGTCCGGACCCCGAAATGCGCCCGCTGCCGCAACCACGGCTACACGGTGCAGCTCAAGGGCCACTCGGGGAAGTGCCGCTTCTTCTGCTGCCTGTGCTGGAAGTGCTCCCTCATCACCGAGAGGACCAAGATCATGGCCACCCAGAGGCGCATCAAGAGGCTGGCAAAGGAGGAGCCGGCTGATCCGCCTCGACACCCCGGGGGCCACGGCGACCATGCGGGCGCGGTGGGAGTCCAGGGCGGCGGTCAGGGCGACGCACCCCGGCCGGGCTCCGTGATCAGGCGCGACCCAGGGAGGGCGGCACTGGGGGGCCCGCCGAGCCCCGGGGCTGTGCTGGGCGACCCCCGACTGCAGTCCAGCCACGGCCGCGGTGGCAGCGGGGGAAGGGGCGGCGGGCTGGGCGTGGAGGGCCACCAGCTCCGCGGCAGCCCGTGGGGCTCATTATTAGGCAGGGATTTGCAAGACAGCGCCTGCCAGGTGCTGGGAAGACACCCTCCTCATTTCCCTAAAGATTACGTCATCGCCGAGGTCTCCCAGCGAGAGATGTACCCCGGCGAGGTGCTGAGCGTGCCGTTCCCCGTGAAGCTGTACTCGCGCTTCCCCGGCGGCTGCTCCTGCCAGACCATCTTGGTCAACGTGCCGCCCGGCCCAGCGCCATTCGAGGAGCCCCCCGTGCCAGCCGGCTTCCCGCCCTTACAGCCGGGCAGCGTGCCGTACTGCCCCGAGTCCACACAGGTCAGTGAGCCGCGTCTCTTTCCGTCTTCTGAACTGAACAGTCGTGCACTCGAAGCCACAGACTATGATGGCCGAGTTCCCTTCTTCCCAGCCCAGTCGGCACGGCCCGGAGCCTCCCCGGACAGACTGCAGCCCCTGGGACAATACCCCTACCCCGCGCCCGTCCTgcccagagagagggagcaggccGCAGCTCCACAAGGAAGCCCCGATTCCGACGTGATCTCAGTGGGAACCGAGACGTCCTCTCAGGAAAACGTGTAA

Function

GO: NA

KEGG:

id description
K19492 DMRT6, DMRTB; doublesex- and mab-3-related transcription factor 6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005239 True 1047 mRNA 0.68 4 19701463 19704317

Neighbor

gene id symbol gene type direction distance location
AMCG00005231 NA coding upstream 137377 19552463 ~ 19564086 (+)
AMCG00005217 NA coding upstream 585769 19092227 ~ 19115694 (+)
AMCG00005197 NA coding upstream 874971 18824891 ~ 18826492 (+)
AMCG00005198 NA coding upstream 894973 18793732 ~ 18806490 (+)
AMCG00005203 serbp1a,LOC107724138,LOC107551037,LOC102797140,LOC107684131 coding upstream 947873 18741992 ~ 18753590 (+)
AMCG00005237 NA coding downstream 5019 19709336 ~ 19711528 (+)
AMCG00005238 NA coding downstream 38036 19742353 ~ 19755790 (+)
AMCG00005235 LOC106598390,LOC106594647 coding downstream 57851 19762168 ~ 19771973 (+)
AMCG00005236 NA coding downstream 71162 19775479 ~ 19783604 (+)
AMCG00005246 NA coding downstream 112523 19816840 ~ 19836486 (+)
G146307 NA non-coding upstream 108369 19592750 ~ 19593094 (+)
G146306 NA non-coding upstream 115807 19585448 ~ 19585656 (+)
G146304 NA non-coding upstream 125889 19573323 ~ 19575574 (+)
G146303 NA non-coding upstream 131460 19569473 ~ 19570003 (+)
G146256 NA non-coding upstream 236488 19463996 ~ 19464975 (+)
G146350 NA non-coding downstream 55835 19760152 ~ 19760791 (+)
G146442 NA non-coding downstream 303099 20007416 ~ 20011135 (+)
G146450 NA non-coding downstream 319856 20024173 ~ 20026061 (+)
G146486 NA non-coding downstream 403785 20108102 ~ 20109541 (+)
G146544 NA non-coding downstream 611690 20316007 ~ 20333122 (+)
G146305 NA other upstream 121656 19579573 ~ 19579807 (+)
AMCG00005232 dock7 other upstream 171010 19475139 ~ 19530453 (+)
AMCG00005199 wdr78 other upstream 879821 18815029 ~ 18821642 (+)
G145932 NA other upstream 1929938 17765257 ~ 17771525 (+)
AMCG00005105 LOC102220226,LOC108442892 other upstream 4316652 15379599 ~ 15384811 (+)
G146519 NA other downstream 478037 20182354 ~ 20184643 (+)
AMCG00005272 mast2 other downstream 548692 20253009 ~ 20279786 (+)
G146575 LOC103468264,LOC108238356,LOC106512499 other downstream 817332 20521649 ~ 20524819 (+)
G146596 NA other downstream 957609 20661926 ~ 20670169 (+)
AMCG00005286 NA other downstream 995169 20699486 ~ 20702472 (+)

Expression


Co-expression Network