AMCG00005197


Basic Information

Item Value
gene id AMCG00005197
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 18824891 ~ 18826492 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005197
ATGCTGGGAGAGCAGCCGCAGGGAGACCAGGAAACCAGGAGACCAGGAGACCAGCTGACCAGCTTCTTCATCACGAGGGACAGGAGACTTCTTGCGTCCGAAGCCACGATGAGAGCCGTGATCTTGCCCGTGCTGCTGCTCTTGGCGCTGTCCGCCATCGCCCAGGTCCAGGGGGAGGTGAAGGTGGTCAAACTGTGCGGCCGGGAGTTCATCAGGGCCGTCATCTACACCTGTGGAGGCTCCCGGTGGAGGAGAGTGCCGAGCGAGCGAGAACTGGCCGGTGAGTCCGTcgctggagggagggagggaagggaggagagggaggagagggaggagagggaggtggaAGGAAGCCCTgGCCCGGACGGCGAGGATGTGGACTCTCAGGAGGTCCCCCCCTACAGAGCGCCGGACGAGCCGGACCGAACCCTGCAGGCCCGGCGGGACCTGAACCAGCTCCTGACCACCGCCTGCTGCCAGTGGGGCTGCAACAAGAAGGACCTGAGCACGCTGTGTTGAGGGAGAGGCGTTCATCTCCACCGAGAAAGACTTGCACTGATCCCACCGACACGCAAAACCCAACACAGAGAAACGCCGTGAGAATTTTGCTTTGAAACGAAcctaatttaaaacacacaaaccctCTCGAATCTAACTCAACTGTTCATTCTAGTCATGCTGCAGTATTTTCTTCACATGCATTGTATTTATGCTTTCAGCGCAGGTATATACGCTCCAATGAAAGCTCAACTGTTTACTTCTCAGAAAGCCAGCCCACTCCCGGACGAAGCGGCGTGTTTTCTTATGTACAGGACAGATTGTATTCCACACCACAAAGTTCCGTTTCCAGTTTAGGAACTCGAATTGTAACAATCAGGGAATTTGATTGGGAAAAGCCTCCCCGCAGTGTGAATGATCTGAATGTCTTGTATTTTCCGATGTTTGCCTAATAAATACTATTGCATAACCTCAACA

Function

GO:

id name namespace
GO:0002011 morphogenesis of an epithelial sheet biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0090504 epiboly biological_process
GO:0001702 gastrulation with mouth forming second biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005197 True 975 mRNA 0.55 2 18824891 18826492

Neighbor

gene id symbol gene type direction distance location
AMCG00005198 NA coding upstream 18401 18793732 ~ 18806490 (+)
AMCG00005203 serbp1a,LOC107724138,LOC107551037,LOC102797140,LOC107684131 coding upstream 71301 18741992 ~ 18753590 (+)
AMCG00005204 NA coding upstream 90963 18728705 ~ 18733928 (+)
AMCG00005205 ddr2,ddr2a,LOC106584138,LOC106560289 coding upstream 98676 18713405 ~ 18726215 (+)
AMCG00005206 uap1,LOC106584139 coding upstream 129185 18684208 ~ 18695706 (+)
AMCG00005217 NA coding downstream 265735 19092227 ~ 19115694 (+)
AMCG00005231 NA coding downstream 725971 19552463 ~ 19564086 (+)
AMCG00005239 NA coding downstream 874971 19701463 ~ 19704317 (+)
AMCG00005237 NA coding downstream 882844 19709336 ~ 19711528 (+)
AMCG00005238 NA coding downstream 915861 19742353 ~ 19755790 (+)
G146091 NA non-coding upstream 60593 18764043 ~ 18764298 (+)
G146090 NA non-coding upstream 67020 18757667 ~ 18757871 (+)
G146088 NA non-coding upstream 68296 18756075 ~ 18756595 (+)
G146043 NA non-coding upstream 282051 18541256 ~ 18542840 (+)
G146021 NA non-coding upstream 526788 18297874 ~ 18298103 (+)
G146140 NA non-coding downstream 66575 18893067 ~ 18896727 (+)
G146172 NA non-coding downstream 222056 19048548 ~ 19053126 (+)
G146188 NA non-coding downstream 257527 19084019 ~ 19084317 (+)
G146202 NA non-coding downstream 291039 19117531 ~ 19195204 (+)
G146222 NA non-coding downstream 391939 19218431 ~ 19219345 (+)
AMCG00005199 wdr78 other upstream 3249 18815029 ~ 18821642 (+)
G145932 NA other upstream 1053366 17765257 ~ 17771525 (+)
AMCG00005105 LOC102220226,LOC108442892 other upstream 3440080 15379599 ~ 15384811 (+)
AMCG00005060 LOC106599426 other upstream 4636562 14155155 ~ 14188329 (+)
G144940 NA other upstream 6043721 12780580 ~ 12781170 (+)
AMCG00005232 dock7 other downstream 648647 19475139 ~ 19530453 (+)
G146305 NA other downstream 753081 19579573 ~ 19579807 (+)
G146519 NA other downstream 1355862 20182354 ~ 20184643 (+)
AMCG00005272 mast2 other downstream 1426517 20253009 ~ 20279786 (+)
G146575 LOC103468264,LOC108238356,LOC106512499 other downstream 1695157 20521649 ~ 20524819 (+)

Expression


Co-expression Network