G146202


Basic Information

Item Value
gene id G146202
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 19117531 ~ 19195204 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU183921
ACACCGTGAATTTTATTATgggaaggaagaaaaagcagGAATTCAGCCCAAGTCAGATCTCCGTCAAGACTGTGGTTTATTCCTTCTGAACAAGTTCTCTACAAAAGAAACCACGATGCGTCAAAAGATGCATCAGAGATAGACCGGAGCAggttggaataaaaacaattaaaacagaagtATGTGTTGCTGGCTGGCGAGTTTCAgtcaaacatttattattttggaatGTAAAAGACAATTCCTTCAGTTCAAAAATCATTTCAGTGGAGTGAGAAAGGGAACAAAAGATGAGTGGTGaaaaaagtacataaatacagagaattaaaataaattaaattgtgttcaaattaaaagtgTAATAATATCCACTATGGAAAACATTCTTCAATTTTATATTACAGCGGTAAATCGTCTGCATGCTGAAGTCCAATTGCGGCTAAAAAATAGCTTATTCACAGTAAAGCAATATCCACAGatttggaaatataaaatattgcaaaaatCTTAAATCTCAGGTCAGAAAAATCTAGACAAATACggtcaaacaaaaacatcttgcaaaaaaaaaaaaaatcagttttcagTCAAAATACAATTAGCGTAAATAGAATTCTAGAGACATTTATGGTCTTGTCCCAAGCAAAATGGGTTTGAACATCGCAAATTTCGTAGGAGGAAATACAGACATCTACAGGATTGCTCATTCAGTGACATCGGAGGGCGCCTAGGCTgggttttaaatatatctccCATAATGCACCTGGTCAACAACAAGCAGAAACACATGAATCGAAACACGACGCATGATAAAACCCTGCCGTGAGCCCACTCTCGTACGCACTAGGTCAGCGTTAAAATCGTCTATACCAACAAAAAAGCAAGCCTCGTCACAAAACAGAGACCCGATCCGAGATGGCGACGAAATATCAGATACCGAAGAGGTTCCGGATCTGAACGCTTTGTGACGAGGGAGATTACTTGGAGGTTAATTACCACCTCGATCGGGACACGGATGCCGATTTTGATGCAGATGTCTGTAAAACTAAAAGGACTAAAATCACagcaaaacaatatgaaaatttaaaaactaggatacaaaaaatttaaaataaatgaattgtgGTGGCTCAGTTTGGTTCGCCTTATATAGTAACACAACAAGACGGTAAAACAAGACACTGTAAGAGAAAGCTAGACACTCACAAACTGACCAGTCCGAAAAACAACCCCACGCGTCAGATCTACCTGCGATAATCGAAACTAATGGACACCCAAGATGGTGATTTAGTGCTCAAGATAAGGTTAGTGAGGGTTTTCGCCCCAAAATGGCTTTATTGGCTTCAATACATCCGCTTTAAATTCCTGAATTCCTGCAAGACACCAGTctgcattagaaaaaaaatcttattacAATAGAACTCGtcaaaaattacatttgcattttatttacagcttCCACTACAGATATGCAGGGCTGCAATTATTGCCTTTAAGGcttgaagaaaaacagaaaaaagataCTTGGACAAAGGCATTGTAAGCGATTAGCAACACTTATATTGAacgaataaaaacaaaaatcttgcCCATTTCATAACATCAGGTTGCTGAATTATTTGTTAGTGGTTTTATTCCGAagcttattaaaacaaaacgcTCTCCAGTGCGATCCTACGGGCAGATGTGGATCTCGCGTGGCCGATCCCTCACGCGACTGGTggatttatattataaaaaaaaataaaataaaaataaaaaaaatcattcgCTTCATCCCTGGAGAGTGCGAGTgtcgggagagagagaaaattgaaTCGCTGCTAAGCTTTCATACCCTGAATACGAGCCGTGATTAATATTGCCTTGGTGTCAAAAACAACACGGGCGGAGTGATGAGCAAGCACAACATCTTCCACCACACACATCATTCCCaagaaagaacataaaaacGTTCCGAATAACCCCCCAGAACGGTAGTGCAAGACGACTCCTCCCTCACTGGCCTCGCCAGACTATTTTGACACACGCTTGTGCGTCCCCACACTCCAAAAAGCGCACGAACACAAGCCCGACGCGGTACAGAACTCGAACCCGGCCGCCAACACCGAGGGCGACTGTAAGAAGAACAGGAGACAAGATTCTAGAACTACAGCAAAAGTCATCCGGGGCACCGAAACGTGCCGCCAAACATTATTGCATTGATTGTTTGACACGGCCGTCCAGCCCGAGGAGGGTCTTCCCGTCCTTGGGCGGAGAAAAGCTTTGTTCCCGGAATCGGGGCGACCGTCCCACTGACTCCGGTCAATCATATCGAGCAGCAGAGTACTGTTCACATGGCTAATCGACtcctatatttaaaaagtgaccGCAAAACTAAAGTTCGCTAAAATTCCTCCAAAGTAAAAATCGGTTTCACCAAAAACGCTAAGGATGttctttacattgttttttaaagttaaaactaGAAACTGAACCAGGGTTGAGTTCATTCTCCTCTTCAATCCAGCATCTCAATAAAAGCCCCTTTTACAAAACAGCCGACGATACGTAACCCGCAGTAAGACCTGCGtgaatgcaaatacaaaagtagttatacatttttataatgtacagttttttttttttattcctctttttttttttttttttttttttttttttttttttttta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU183921 True 2674 lncRNA 0.40 2 19117531 19195204

Neighbor

gene id symbol gene type direction distance location
AMCG00005217 NA coding upstream 1837 19092227 ~ 19115694 (+)
AMCG00005197 NA coding upstream 291039 18824891 ~ 18826492 (+)
AMCG00005198 NA coding upstream 311041 18793732 ~ 18806490 (+)
AMCG00005203 serbp1a,LOC107724138,LOC107551037,LOC102797140,LOC107684131 coding upstream 363941 18741992 ~ 18753590 (+)
AMCG00005204 NA coding upstream 383603 18728705 ~ 18733928 (+)
AMCG00005231 NA coding downstream 357259 19552463 ~ 19564086 (+)
AMCG00005239 NA coding downstream 506259 19701463 ~ 19704317 (+)
AMCG00005237 NA coding downstream 514132 19709336 ~ 19711528 (+)
AMCG00005238 NA coding downstream 547149 19742353 ~ 19755790 (+)
AMCG00005235 LOC106598390,LOC106594647 coding downstream 566964 19762168 ~ 19771973 (+)
G146188 NA non-coding upstream 33214 19084019 ~ 19084317 (+)
G146172 NA non-coding upstream 64405 19048548 ~ 19053126 (+)
G146140 NA non-coding upstream 220804 18893067 ~ 18896727 (+)
G146091 NA non-coding upstream 353233 18764043 ~ 18764298 (+)
G146090 NA non-coding upstream 359660 18757667 ~ 18757871 (+)
G146222 NA non-coding downstream 23227 19218431 ~ 19219345 (+)
G146256 NA non-coding downstream 268792 19463996 ~ 19464975 (+)
G146303 NA non-coding downstream 374269 19569473 ~ 19570003 (+)
G146304 NA non-coding downstream 378119 19573323 ~ 19575574 (+)
G146306 NA non-coding downstream 390244 19585448 ~ 19585656 (+)
AMCG00005199 wdr78 other upstream 295889 18815029 ~ 18821642 (+)
G145932 NA other upstream 1346006 17765257 ~ 17771525 (+)
AMCG00005105 LOC102220226,LOC108442892 other upstream 3732720 15379599 ~ 15384811 (+)
AMCG00005060 LOC106599426 other upstream 4929202 14155155 ~ 14188329 (+)
G144940 NA other upstream 6336361 12780580 ~ 12781170 (+)
AMCG00005232 dock7 other downstream 279935 19475139 ~ 19530453 (+)
G146305 NA other downstream 384369 19579573 ~ 19579807 (+)
G146519 NA other downstream 987150 20182354 ~ 20184643 (+)
AMCG00005272 mast2 other downstream 1057805 20253009 ~ 20279786 (+)
G146575 LOC103468264,LOC108238356,LOC106512499 other downstream 1326445 20521649 ~ 20524819 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_032931 raver2 coding NC_007117.7 CM002890.2 31430791 ~ 31576397 (-)