AMCG00005364


Basic Information

Item Value
gene id AMCG00005364
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 22116489 ~ 22122971 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005364
GCCATCTTTAATTTAAGGACGGGGAAGGAAGGTGTTTTATTTACTGACTGGATTCATTCgtcattgaaaaacaaacaaacaacaacgtCCGACTGCGCGTCTCGCAGCCCCTCGAATCTCCCGCCCCTCTGTGCGCCGTGACGCCCGCGGCTGGGTCTCGGCGACGTCAATCAGTCACGCATGTGCCGCTGACCAATCCGCAGCCCGCAAGCTGACCGATGTGCCCGGGGGGCGGGCCGAGCCGGAGACTGACGGCCGGGAGATGCCGAGCGCCTGCCATCCGGTTCGCCGTTGACTCGCAGAAACAGAAAGCGGTTGGGACGGAGGACACCGCAGACCCGCACGGCCGCCCGGGAGCACGCCCATGGCCGGGAGACCTCTTGTGGGAAACAGAACAAACCCGCCCGCCGCCCGGACCGCTCCGCTCGACCCGCAGGACAGCCGGTCCGTCCGCCGCAGTTCCACTGACCCCCCGCACTCCTGACTCAGAGATGGCTGCCCCCCCACAGAGGAAGCTTGCAGGCCTGATGGCTGCCACCTTCACCCCCCTGAGCGCCCAGGGGGAGATCAACCTGGCTGTGATTGAGCCATACATCGAATACCTGGTGGAGAAACAGGGCGTTCGGAGCGTGTTCGTGAACGGGACGACCGGTGAGAGCTTGTCCCTCAGtgtggaggagaggaagaagctGGCGGAGGAGTGGTGCCAGCGAGGCAAGGgcaaGCTGGATCAGGTGATTGTCCATGTGGGGTGTCTGAGTCTGAAGGAGTCGCAGGAGCTGGCCCAACACGCAGCGGACACGGGGGCTGATGGGATAGCAGTCATCTCCCCCTGCTTCTTCAAGCCTGTGGAGAAAGactcacTGAGGCAGTTCCTCCAGCAGGTGGCGGCGGTGGCCCCTCAGCTGCCCTTCTACTACTACCACATCCCCGGGCTGACCGGAGTGCACCTCAAGGCAATGGACATCCTGCAGGACATAGAGGAGTCCATCCCCTCCTTCCAGGGGTTAAAGTTCAGCGGCAGTGACCTCATGGACTTCGGCCAGTGTGTCCACCACAGCCCCCCCCACTGGCCCATGCTGTATGGGATGGATGAGCAACTGCTGGCGGCGCTGGTGATGGGGGCGCACGGCGCAGTGGGCAGCACCTATAACTATATGGGCTGTGTAGTGAACAGGTTGCTGGCAGCCTTCGAGAGGGGAGACTACATGCAGGCCAGAAACATCCAGtttcagactcaGGAGGTCATCTCCTACGCGGTGAAGCAGGGCTTCGACATGGCGGTGAACAAGCAGCTGATGTGCGAGGTGTCCAGGCTGCCTCTGGGCCCCCCCCGCCTGCCCCTGCAGCAGTGCCCCCCCGAGCGCGCTCAGAGCATCGCCCGCAGGCTGCATGAGGTCCTGGGAGGGGACTGAGGGGTGGCGGGGTGGGACCTATTACCCCCATCCCAGCAAAGAGCTCCTGTGACTGCCCTagtacactgacacacacacacactggctcGCTCACACTgactcttacacacacacacacacacctcacctcacctcacctcacTGTAGAGCacacgtgtgtctgtgtgtacctAAGCGATCTTGCACACAGAAACCGTGTGTGTTAGGAGTAGTTTACAccttatattctttttttttttttactcaattTCCTAGTGATCGTCGTATCGATTCTGACGCCGCGGCCCTGTAACACTCGGCATGATGCTGGAATAAACATGTTCATGACTATGATGCTCCGAGTGCATGTCTGTCCCGGGCCTGGTCCACGACACGTGTCTGTgttcgtctctctctctctctctccttgtccaTCGTGACGCTGCACAGTGTGTCACAACACAATGACTGAACCGGTCACAGCTGGACGAAGGTTTACACAAGTCTTAATGTAATATTGAATATGTAGATCTctatatacataatacataatattttttaataattgtaatagaATCTTCAATGCGTATATGAAGTTGAGCTTCAGGGAGATGTTTTGTAAGcaccttttaatattttataaccaTTTGAGAACTGAACATATCCCTCCTTCCTTCCTAAACGATGTTGTTGTTGGTGCTGTCGGCCAAGCTGCTGCTTGCACTGCCGATCGCCTCCCCGTTTCTACAACGCGCCAGACCTGAGGCCTGTATAGGgagagatgcatttaaataaacactttgcttttgattctgaaca

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016829 lyase activity molecular_function

KEGG:

id description
K01639 E4.1.3.3, nanA, NPL; N-acetylneuraminate lyase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005364 True 2213 mRNA 0.57 12 22116489 22122971

Neighbor

gene id symbol gene type direction distance location
AMCG00005357 NA coding upstream 55022 22060209 ~ 22061467 (+)
AMCG00005358 NA coding upstream 85391 22024523 ~ 22031098 (+)
AMCG00005356 plpp6,LOC107683852,LOC107739850,LOC107669136,LOC107712867,LOC107597802 coding upstream 92001 22020862 ~ 22024488 (+)
AMCG00005350 NA coding upstream 179162 21932366 ~ 21937327 (+)
AMCG00005348 NA coding upstream 188016 21920884 ~ 21928473 (+)
AMCG00005366 NA coding downstream 811 22123782 ~ 22130249 (+)
AMCG00005370 NA coding downstream 7314 22130285 ~ 22132482 (+)
AMCG00005381 NA coding downstream 52515 22175486 ~ 22178376 (+)
AMCG00005378 NA coding downstream 58693 22181664 ~ 22198741 (+)
AMCG00005376 slc35a3,LOC108230529,LOC105011626,LOC106613831,LOC107393273 coding downstream 77214 22200185 ~ 22211145 (+)
G147066 NA non-coding upstream 29145 22081644 ~ 22087344 (+)
G147027 NA non-coding upstream 159444 21956601 ~ 21957045 (+)
G147024 NA non-coding upstream 165902 21950328 ~ 21950587 (+)
G147022 NA non-coding upstream 167871 21948086 ~ 21948618 (+)
G146928 NA non-coding upstream 371038 21744879 ~ 21745451 (+)
G147029 NA other upstream 132345 21957440 ~ 21984144 (+)
AMCG00005351 NA other upstream 146797 21966858 ~ 21969692 (+)
G147025 NA other upstream 163607 21952569 ~ 21952882 (+)
G147021 NA other upstream 168498 21945558 ~ 21947991 (+)
AMCG00005345 NA other upstream 228921 21883199 ~ 21887568 (+)
AMCG00005365 sec22b,sec22bb,LOC102790162,LOC108439390,LOC107676649,LOC100705437,LOC107585928,LOC107548814 other downstream 9594 22132565 ~ 22145610 (+)

Expression


Co-expression Network