G142835


Basic Information

Item Value
gene id G142835
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 435422 ~ 439221 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU179669
AAATGATTGGATACATTtattaacacaaaattaaaaatccatgtacagaggaaaaaacaaacaaacatacatttaaatctaaCGTGAATTTAGATATTCAGTGTTCatcaaaaccttttatttttagtaaactTAATATTAGACCCAACTGATTCATGGGATTTTTTATTCTTCTGGAATAAACAGACAAGATGTGGAGATGCATTCCGTTTCTCCTTTTTAGCACTTGCCAATTTAGACAATCTGGTATCAAACAGACAAATGCCatggtttattatttatgtttacacCACTCACCTTTTCCATTTGCCTCCGAAAACAGCAAACGATAATAATGGTTTTGTTAGCGATATTCCCATCCTCTAATTTTGTCCTTCATGGAGGAGATTCTCTTGTTTGAGGAGGTTGTCCTAAAACTCTTAATTTGCACTCTTGCAGGCCACAGTCAGAATTTTACTGCATCATGCGACTACTATAAAGTAAAACCAGATTTGGAAAAATACAAGACATTTGAAGGTTAACTTAAAACTTATTGCCAAATTCTAGCAAATTACTcaattaattgctttttaaaatggcaaaaccACTTAAGCCAAGACATTAGACTGTGGTCGATCATAGACAAAGGTTTTACATTTGCAGTTGTGTAAGAATATGGGGAAAGGGTTTGATTTAAAAAGTCAGATTACTAGCAGGAAACACAGTTAGTTTCTCTCCTCCCTGAATTTGGAAagttaacaaataaattaatataaaagcaTAAATACTATGAACAATGTAACCTACACTTAAAACATAATCTTAACTATGTACAGTTATAGGGAATGGTACTccaccacatttaaaaatgcagggaATAAGCAGTGCCTCTAAAAGTAAGAATGAAATTACCAGCTGCATGATGGCCCAACTTAATGCATCCCAACTCCCCTAGGCCAGACTCATGGGTTAGGGACCAGTTATAAATCAGGTTAGAAGCTCACCATGAATGTAATTTTGTTCCCCATTGACAATGGTCAGCCACCTCAAATCTGGTTGGGTTCACCAAGTTGAATACATGCTTTGGTTTAGAGGCATATGCATAATTTCAATCCAAAGCAAGAAATacttatttagattttaaaaaacaaaaaacagtggtttcactttattttttccttccaggaataaaacaaagatcTAACTTAACCAGGCATTTCTAAAAACTGATCTGAACTAGATTCACCCAgcaaacatttggaaaaatgtTAAAGCATCCCCGGAGCTAGAATAAGTTTTAAAATCACTGGGAGAACATTTTACAGTACAAGCGTCACCATCCGATTCcagtacactttaaaaatgtgagCACGATGTTTGACCCTGGATGTCCCCTGTAAAAACACTGTGAACAAACTGCCATCGCTACAGTAAATTCACTGGATGGGTAATTGGGGAGTTCATAGTGGACTTGTGTTGGTTTTAGATGTCCAGATATTTAGAACcatatttgcaatttaaacatgCACGCTTTGATACCATAAAACAGTGGTTTTCAANNNNGTGGAAACGTGCCATAAGGCTGTAAATTAGGATAATATGAGTCAGTTAGGTGTGGTCCTTTTTTATTCCGCAAAGGTCTCCAGATTAGCCTCgctaattaaagaaataaagatcTGTGGGGAAGGTGATGTTATTCATCTGGATTCACTGGTCATGAGAATTGCTTCGTCTGGCTTGAACAAGGTAGCCCTTTGATTTTATGATGCCTCTGCTTTTGACAATGACTGAGTAGCGTAGGACCCACTCCAGGAACCACTCTGTGACCAGCGGCTCCCCAATGCTGTCCTGCACAGCCTCCTGGAATCCGCTTGCAGTCATCTTTGGGATCATTGTGGGTCAGCAGCTGGATATCACACTCCTTGGCAAATGCAGTCAGGTCTGGAGGCATCACACAGCAGGAGGCCAGGTTCACCTGATTACTGCTGGGCTTTATCTGAACACAAAGGAGGATACATATTATTGCACAGAATATACATTTCTGCACCTTGAAAAACTGATTTGAATAATCTACAGGTTGGCACATTTCACAACCTGAAaggccaatgaaaaaacaaaaatcaccttTTCTCTGCTGACTGCACTGCATAAAATGATGCAAGCGAGTGATCATTTTACAAGAGACATGATTGGAAGAACCCACCTTTCCACCTAAGCGGTAGATCCTTTCAATGCAAGCCCTGATAAAGACACCAGGAGTATAGTTTTGATAGCCACCTTGGCTCTGGTAAACCTCTGATCGTTACCTGCGCCCACAAGTACAGCTGTTCCAGTAGAGCTTTATCCAGATCGGAGGTGCCGATGGCTGTGACCTTGTGGCTCTGGACCAGGCTTTCAAGCTCCTTCCAGAGAGGCTGCAGGTGACCCAGGGCTAGGCCCTCTCCCTCAGGCAGCAGGGGGGGGGCAATGATCACAGAGTCCAGCATGGACACCCCCAGGCCTGAACATGCTGCCAACatccaataaaatacaaatcaatcaaGCTCTCCTGTGAACATGGGATGGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU179669 True 2546 lncRNA 0.40 3 435422 439221

Neighbor

gene id symbol gene type direction distance location
AMCG00004746 NA coding upstream 297169 134381 ~ 138253 (+)
AMCG00004747 osbpl9 coding upstream 326219 48855 ~ 109203 (+)
AMCG00004748 NA coding upstream 404737 20381 ~ 30685 (+)
AMCG00004745 NA coding upstream 427194 5996 ~ 8228 (+)
AMCG00004759 NA coding downstream 40625 479846 ~ 507826 (+)
AMCG00004757 LOC107707585,LOC107599011,LOC107657879 coding downstream 100554 539775 ~ 557281 (+)
AMCG00004758 NA coding downstream 211481 650702 ~ 659789 (+)
AMCG00004774 NA coding downstream 967778 1406999 ~ 1407247 (+)
AMCG00004776 NA coding downstream 990297 1429518 ~ 1431810 (+)
G142776 NA non-coding upstream 166214 179387 ~ 269208 (+)
G142737 NA non-coding upstream 325029 109314 ~ 110393 (+)
G142847 NA non-coding downstream 127162 566383 ~ 570143 (+)
G142881 rpe65,LOC107708597,LOC107657893 non-coding downstream 228736 667957 ~ 701758 (+)
G142910 NA non-coding downstream 349817 789038 ~ 792943 (+)
G142958 NA non-coding downstream 850488 1289709 ~ 1289985 (+)
G142973 NA non-coding downstream 972736 1411957 ~ 1412207 (+)
AMCG00004749 NA other upstream 312457 116491 ~ 122965 (+)
G143075 elavl4,LOC106613894,LOC103028496 other downstream 2001320 2440541 ~ 2559080 (+)
AMCG00004788 NA other downstream 2683860 3123081 ~ 3160209 (+)
AMCG00004793 NA other downstream 2938594 3377815 ~ 3395158 (+)
G143366 NA other downstream 3510205 3949426 ~ 3949837 (+)
G143404 LOC107757485,LOC107715094,LOC107588062,LOC107653629,LOC106613586,LOC107592717,LOC107669813 other downstream 3669801 4109022 ~ 4109655 (+)

Expression


Co-expression Network