AMCG00005553


Basic Information

Item Value
gene id AMCG00005553
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 4604876 ~ 4615951 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005553
ATGGCCACTTTCCCGTCAGAGTACACCATTGGGGGGGTGAAGATCCAGTTCCCCTGCAAGGCCTACCCCTCGCAGCTGGCCATGATGAACTCGATCGTGCGGGGGCTCAACTGCCAGCAGCACTGTCTGCTGGAGAGTCCCACTGGCAGTGGGAAGAGCCTGGCGCTGCTCTGCTCGGCACTGGCCTGGCAGCAGGCAAAGTACGGTAATGCGACAGTGGACGAGATTTCTCTGGACGATTGCAAGAAGCCAGGGGCTGCCCAGCTCTGTCAGTGCAACTGCCACTCCTGCCCTCCCCAGCTGCCCGGTTCTGCGGCTCCCAGCCAGCCCCCTGCCCCACCAACGCCCCCTGCACAGAGCACGCCCCTACCACTCGACACAGTTTCCCAGCCAGAGGAGTTCAGCCTGAAGGGCACGCTGGCATCCCGGCTGTCCCAGCGGCTCCAGGCCTCTGTCTGCCAGGACCATGATGATGACTTCCAGGAGGCCAGGAAGAGGATCCGCACCCCCTCCACTGACAATAAGGTAACCCCCGTCTGTGAGCCTGTTCCGGCAGGGGCCAGAATCATGGAGCCTACCGTTGCATGCTTGTGTTTGTCCTCGTGTTGCTGTGGGAGGGAGGCTGACCTGGTCTGCGCTGTGCAGGAGAGAAAGCGCCGCTGCCTGGACAGAGGGGTACAGTTCATCGACGACGAGCCGGAGCCCGAGGATAGAGGCCCCGGGGCCCAGCGCTGGAGCGTGGAGCACAGCTCACACACGGAGAGCACCCACAGACTGCCCGCAGACCCCTGCCCTGACAGGGTATCGGGCTACCTGTGCCGAGTGACGGAGCTGTTACAGACTGTCTTCCTCTGTATAAACCAGCCCCCGatcccctcttctctctctccagcccaGCTGCTTCACTCCACAGCTCTTTTATACACGCCGATGCGTGCCAAGACGGATAAGGACGGAGGGAAGGGCAAGGAGAATGGCGCCGGTTGCTGCGGCGGGAAGGCGAAGGTTCCCAAGATCTTCTTCGGGACACGCACTCACAAGCAGATCACGCAGATCACGAGGGAGCTGCGGCGCTCGGCCTACTCCAGCGTCCCCATGACCATCCTGTCCAGCCGGGACCACACCTGCGTCCACCCCGAGGTGTCTGCGCAGAGCCTGGCGCTGTCACACCCCTCGCCCGAGACAGAGCCGGCCGGCAGTCCTGAGAGAAAGGCAGGTGGACGTTTCTCCCCCAGTCTGTACTGTGCTTTGACCCCTTTAACCTGTGCCGAACTGGGAGTGATAaccgtgtgtgtttgtgtcgtgTTGTGTGTGCAGGGCCAGTCCTGTCGCTATTTCCACGGCGTGCACAAGATGCGAGAGCAGAAGCTGCTGCAGTGGGAGCATGGGCTGCACCAGGCCTGGGACATCGAGGAGCTGGTGGGACTGGGCCGAAAACTGCGCTCCTGCGCCTACTACGCCGCTCGCGAGCTCATGCAGGAGGCCGACATCGTCTTCTGTCCCTACAACTACCTGCTGGACCCGCAGATCagggagagtatggACATCTCCCTAAAAGGCCAGGTGGTGGTGCTGGATGAGGCCCATAACATCGAGGACTGTGCCCGAGAGAGCGCCAGCTTCACCCTCACCCAGCATCAGCTGCTGACCGCCCGCGAGGAGGTGGACCTCATGGTCAACCACAACATCCGCCGTGCCGACCACGAGCCCCTGAGGGCCTTCTGCTGCAGCCTCATCAACTGGGTCGAGGAGAGCTGTGGGCTGTTGGTGGAGAGGGGGTATGAGACGGCTTGCAAGGTTTGGAGTGGCAAGGAGATCCTGGGCATCTTCCACGGCCTGGGCATCACAGAGGCCACCTTTCCCATCCTGCAGAAGCACCTGGCGGCCgtgctggagaaggaggagaaggtgtCGCAGGTGCGCGGGCGAGAGGAGACCGTGCAAGTCCCCGTCGTCAGCTCCAACACTCAGTCTGTGCTCAGGGGCCTCTTCATGGTACTCGACTTCCTGTTCAGATACCAGTGCCGGTTCGCAGATGATTACCGGGTGGCGCTGCAGCAGAGCTACGCCTGGACCAACCAGCCAGACCTGCCCGACGCTCAGGGCTTCTTCGCCCGGCCGCGCCGACGCCAGAGCGCCCGCAGGAAGACGCTGGTGCACACACTGAGCTTCTGGTGCCTCAACCCTGCGGTGGCCTTCTCGGACCTGAGCGGCACCGTGCGCACCATTGTCCTGACCTCCGGGACGCTCTCCCCCATGAGCTCCTTCTCCTCCGAGCTTGGCGTCAAGTTCTCCATCCAGCTGGAGGCCAATCACGTGATCAGCAGGTCGCAGGTGTGGGTGGGCACAATTGGCGCCGGGCCGCAGGGGCGGAAGCTGTGCGCCACCTTCCAGCACACCGAGACCTTTGCCTTCCAGGACGAGGTTGGTGCGCTGCTGCTGAGCATCTGCCAGGCTATGGCACGCGGCGTGCTCTGCTTCCTGCCCTCCTACAAGGTAAGGCTGGCTTCGTAA

Function

GO:

id name namespace
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
K15362 BRIP1, BACH1, FANCJ; fanconi anemia group J protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005553 True 2514 mRNA 0.63 15 4604876 4615951

Neighbor

gene id symbol gene type direction distance location
AMCG00005545 LOC103910010 coding upstream 84771 4495608 ~ 4520105 (+)
AMCG00005544 lhx1a,LOC105897175,LOC105023804,LOC106613102,LOC106581220,LOC107685180 coding upstream 114057 4479446 ~ 4490819 (+)
AMCG00005537 NA coding upstream 294728 4305625 ~ 4310148 (+)
AMCG00005534 phf12 coding upstream 324431 4264415 ~ 4280445 (+)
AMCG00005536 NA coding upstream 354028 4240208 ~ 4250848 (+)
AMCG00005554 NA coding downstream 10162 4626113 ~ 4635255 (+)
AMCG00005577 appbp2 coding downstream 368279 4984230 ~ 5000598 (+)
AMCG00005580 usp32,LOC107585566,LOC108425843 coding downstream 406320 5022271 ~ 5067746 (+)
AMCG00005578 NA coding downstream 456175 5072126 ~ 5079503 (+)
AMCG00005579 NA coding downstream 464184 5080135 ~ 5082020 (+)
G152943 NA non-coding upstream 70052 4532321 ~ 4534824 (+)
G152906 NA non-coding upstream 311994 4292030 ~ 4292882 (+)
G152866 NA non-coding upstream 344241 4258866 ~ 4260635 (+)
G152764 NA non-coding upstream 843049 3723913 ~ 3761827 (+)
G152657 NA non-coding upstream 1344447 3260210 ~ 3260429 (+)
G153080 NA non-coding downstream 574576 5190527 ~ 5190796 (+)
G153082 NA non-coding downstream 579837 5195788 ~ 5201535 (+)
G153113 NA non-coding downstream 691994 5307945 ~ 5309091 (+)
G153118 LOC106602865,LOC108260233,LOC108429749,LOC105010822,LOC103035912,LOC105896079 non-coding downstream 705109 5321060 ~ 5323923 (+)
G153154 LOC106602867,LOC107597455 non-coding downstream 828428 5444379 ~ 5445257 (+)
AMCG00005546 acaca,LOC107691719 other upstream 41856 4560213 ~ 4563020 (+)
AMCG00005538 NA other upstream 299720 4282517 ~ 4305156 (+)
AMCG00005498 lyrm9,LOC102789908 other upstream 1334032 3266374 ~ 3270844 (+)
G152588 rpl23a other upstream 1755268 2845217 ~ 2849608 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other upstream 2094200 2503910 ~ 2510676 (+)
AMCG00005583 LOC106603777,LOC105895333,LOC108428505 other downstream 598862 5214813 ~ 5241776 (+)
AMCG00005647 NA other downstream 1818570 6434521 ~ 6437078 (+)
AMCG00005667 NA other downstream 1871767 6487718 ~ 6488782 (+)
AMCG00005663 NA other downstream 1992692 6608643 ~ 6662480 (+)
G153675 NA other downstream 2644726 7260677 ~ 7265971 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000072_00760940_00797319 BRIP1 coding CI01000072 null 760940 ~ 797319 (+)