AMCG00005557


Basic Information

Item Value
gene id AMCG00005557
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 3877414 ~ 3878187 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005557
ATGCTGGCCCAGTGCCGACACGGGCAGGAGCCGGgcaaggaagaggaggagaccATCTCGGCGGCTGCGGCGGTCAATTTCAACCAGCGCTCGGACTACGAGGAGGAGTGGGGTCTCCGTGACGGGGACTACGTGGAGCAGACCCTGCTTGGGGAGGACATCCAGGAGGTGAGCAAGGACCCCACCAAGCTGTCCAGCAAGGTCCTTCTCATATACATCATCCACGTCCTGCTCCGCTCACTCATGGAGATAGGCTTCCTAGTGGGGCAGTATTACCTCTTCGGATTCGAGGTGCCCCACCTTTTTCGCTGCGAGACCTACCCCTGCCCCAACAGGACGGACTGTTTCGTGTCCCGTGCCACCGAGAAGACCATCTTCCTCAACTTCATGTTCAGCGTGAGCCTGGGCTGCTTCATCCTCAACATCGTGGAGCTGCACTACCTGGGCTGGGTGTACATTTTCCGGATCCTGTGCTCGGCCTGCTCCACCTGCTGTGAGCCCGAGAGGACCCGGGCCGGGGGAGGGGGCCTGTACTCGCACCACAACCCCCTGCTGCTGCGGTTCCGGCAGTCCCTGCAGGAGAAGCTGGTGCTGCAGGGCTCCCCACCCCTGTCCCAGGAGAAGCCCGGAGGCCTCCCCTCCCACCACCCAGCCATCTCCTTTGAGACAGACTCCACTGTCGAGTGCATGTCCAAAAAGAGCCCGGATGACAAAGCCAAGTCCAAACTGGCTACCATGGCCAAGCTGGGCCGGAGCAAGAAGTCGTGGCTTTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005557 True 774 mRNA 0.61 1 3877414 3878187

Neighbor

gene id symbol gene type direction distance location
AMCG00005559 NA coding upstream 69801 3799267 ~ 3807613 (+)
AMCG00005558 NA coding upstream 88836 3766014 ~ 3788578 (+)
AMCG00005550 NA coding upstream 136583 3739408 ~ 3740831 (+)
AMCG00005551 wsb1,LOC107756317,LOC107746651,LOC107682796,LOC107592922,LOC107587373,LOC107672108 coding upstream 154518 3706653 ~ 3722896 (+)
AMCG00005523 NA coding upstream 224699 3648847 ~ 3652715 (+)
AMCG00005556 LOC107690467,LOC107718289,LOC107664918,LOC107743726,LOC108425789,LOC107585604 coding downstream 8146 3886333 ~ 3889661 (+)
AMCG00005567 LOC107718289,LOC105897181 coding downstream 40169 3918356 ~ 3993279 (+)
AMCG00005535 LOC107690431,LOC107592631,LOC107743685 coding downstream 341694 4219881 ~ 4227690 (+)
AMCG00005536 NA coding downstream 362021 4240208 ~ 4250848 (+)
AMCG00005534 phf12 coding downstream 386228 4264415 ~ 4280445 (+)
G152764 NA non-coding upstream 115587 3723913 ~ 3761827 (+)
G152657 NA non-coding upstream 616985 3260210 ~ 3260429 (+)
G152656 NA non-coding upstream 677227 3199332 ~ 3200187 (+)
G152655 NA non-coding upstream 690426 3183821 ~ 3186988 (+)
G152644 NA non-coding upstream 786759 3071950 ~ 3090655 (+)
G152866 NA non-coding downstream 380679 4258866 ~ 4260635 (+)
G152906 NA non-coding downstream 413843 4292030 ~ 4292882 (+)
G152943 NA non-coding downstream 654134 4532321 ~ 4534824 (+)
G153080 NA non-coding downstream 1312340 5190527 ~ 5190796 (+)
G153082 NA non-coding downstream 1317601 5195788 ~ 5201535 (+)
AMCG00005498 lyrm9,LOC102789908 other upstream 606570 3266374 ~ 3270844 (+)
G152588 rpl23a other upstream 1027806 2845217 ~ 2849608 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other upstream 1366738 2503910 ~ 2510676 (+)
AMCG00005429 ywhae,LOC106567579,LOC105005922 other upstream 1930614 1929455 ~ 1946800 (+)
G152337 NA other upstream 2073511 1799811 ~ 1803903 (+)
AMCG00005538 NA other downstream 404330 4282517 ~ 4305156 (+)
AMCG00005546 acaca,LOC107691719 other downstream 682026 4560213 ~ 4563020 (+)
AMCG00005583 LOC106603777,LOC105895333,LOC108428505 other downstream 1336626 5214813 ~ 5241776 (+)
AMCG00005647 NA other downstream 2556334 6434521 ~ 6437078 (+)
AMCG00005667 NA other downstream 2609531 6487718 ~ 6488782 (+)

Expression


Co-expression Network