AMCG00005558


Basic Information

Item Value
gene id AMCG00005558
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 3766014 ~ 3788578 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005558
ATGAGTCTGACTTCAGTTCAGGTGAAGCTGGTGAAGTACATCTGCAAGCAGCTCCAGTGCAAGCGCAAAGTGCCTGTGAGCGAGAGGCCCCAAGCCCTGGAGAGATACCCGCGACTTGTAGACTGGCTGAGGACCATCAACCTGCGCCCCGAGCTTATCCAGCTGGGGCAGGAACATGGGTCCTTCCGTCGGCGAAAGTGCCGTCTGACCGGCTGGAGAAATGCTGGCTCCGAGGCGGTGCCAGTCAAGCTGTCCCTGGATGCCCTGCTTCAGATGTCAGGCTCGCAGGTGCGAGAGACCATGAGGAGGCTGGGCTCCAGCTCGGAGGAATGCTCACGGCTCACCGCTGCCCTCTCCTGTCTGAAGAGTGCCAGCGAGTCAGGAGGTGAGCTGAAGGATGATGGGGGGCTTTGGATTTCAGAGCCCACGAGGCGAGACAGCAACGCCACCCCCCCCATGGAGCAGCTGTCCTGCCCTGGGGCCACCGTGCGGCCACACAGCCCCTCCCCACTGGCGCGCCCCCCCGGCGGCCCCTGTGGCCAGCCGCGCTCCATCTCCGTCTCGGCCATCCAAAACTCGGAATACCCCACGCTCTACGGACAGGGGCCCTATATCTACAGCGACGCCCTGGGTGACCCCTTCCCGCCCTCGCCCCGGCCCGGCCGCCTGGGGCACGGCAGCACGCCCCCCGCCACGCCCCCCTCGAAGAAGAAGGGCCGCTTGAAGCCCCCCCACACGCCACCGCCGCCCTCTCGCAAAGTCCTGCACCTCCTGCCCAACATCACCACCCTGACGCGCAGCAAGTCTCACGAGTCGCAGCTGGGGAACCGGATCGACGACGTGCCTGCTAACAAGTGTGGGAAGAAGAACAAGCTGTTGCTCAACGTGCAGATCAATGGGAACGGCTGCGATGACTCGCCTTCCCGCTCCCCCCTCATGTCCACACGGACCCCCTCTGCCTCCACCGTACACACTTATGGCCTGCCAGGGACGCCCACCCTGCTGGAAGAGCACGGCACCCACAAAAATAACATGACCATCCTCCGTGGATCCCCTCAGACTTTAAGAAGGGATATTGGTCTACCTGTCACACACAGgttcTCAACCAAATCATGGTTATCCCAGACGTGCCAGGTGTGTCAGAAGAACATGATGTTCGGTGTAAAGTGCAAACACTGCAGGTTAAAGTGCCATAACAAGTGTACAAAAGAAGCCCCTTCCTGCAGAATCTCCTTCCTCCCACtcccAAAGATCCGCAGAACTGAGTCGGTGCCGTTGGACATCAACGTAGATCGGCCTGCCGAAGCACCGCAGTTTGGCACGCTACCGAAGGCAATAACCAAAAAGgaaCACCCACCCGTGCTGAACCAGTTGGACTCCAGTAGTAAcccctcctccaccacctcctccaccccctcctcccctgccCCCTTCCAGCAGAGCAACCCCCCCAGTGCCACGCCACCCCCCAACCCCTCGCCGAAAGGTCCACGCGACAGCCGCTTTCACTTCCCTGATGTGCCCAGTTCACCCCACTCGGTGACGCTGCATCCGGACAGCATCCACAACACTGTTAACACGGAGACGGCCGAAGACTCGGACTCGCAGACAGCCGGGGAGCCGGACGCGGGGgatgaggaggaggcgcaggaggaggaggatgatcAAGCAGAAGACgacgaagaggaggagggggaggaggaaggggatgGGGACGACAGGGGGGAGTGTGGTTCTGACGGAGAGTACGACGCCGACGAGCTTGATGATCTCCCCAGCTCGCTGAGTCCCTGGAAGGGGCCCATCTCGCGCAAGGCCAGCCAGACCAGCGTCTACCTGCAGGAGTGGGACATCCCCTTCGAGCAGCTGGAGCTGGGGGAGCTGATCGGCAAGGGCCGCTGGGGGAAGGTGCACAAGGGCCGCTGGCACGGGGAGGTGGCCATCCGCCTGCTGGAGATCGACGGCAACAACCACGACCACCTGAAGCTCTTCAAGAAGGAGGTGATGAACTACAGGCAGACGCGGCACGAGAACGTGGTCCTGTTCATGGGCGCCTGCATGAACCCGCCGCACCTCGCCATCATCACCAGCTTCTGTAAAGGACGCACGCTGTACTCGGTTGTGAGGGATGCCAAGAACACGCTCGACATCAACAAGACGAGGCAAATTGCTCAGGAAATCGTAAAGGGAATGGGATACCTGCATGCCAAGGGCATCGTGCACAAGGACTTGAAGTCAAAGAATGTGTTTTACGACACCAATAAGATCGTCATCACAGATTTCGGGCTCTTTGGAATGTCGGGAGTGGTTCAGGAAGGAAGGCGGGAGAATGAGTTGAAGGTGCCCCACGGCTGGATCTGCTATCTGGCGCCCGAGATCGTCAGCAAGATGAGCCCTGGTGGGGACGAGGACCACCTGCCCTTCTCCACAGCCGCCGACGTGTACGCCTTTGGCACCATCTGGTACGAGCTGCAGGCTCGGGATTGGCCCATCAAGAACCAGCCGGTGGAGGCCATCATCTGGCAGGTGGGCAGCGGTGAAGGCATCAAGAAAGTCTTGGGAGAAATCAGCCTGGGCAAGGAAGTCACGGAGATCTTGTCGGCCTGCTGGTCGTACGACCTCCGGGAGCGGCCCTCCTTCACGCAGCTCACGGACTTGCTTGAAAAACTGCCAAAACTTAACAGGAGACTGTCCCACCCCGGGCACTTCTGGAAATCTGCAGAGTACGTATCATAG

Function

GO: NA

KEGG:

id description
K14958 KSR1; kinase suppressor of Ras 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005558 True 2736 mRNA 0.61 19 3766014 3788578

Neighbor

gene id symbol gene type direction distance location
AMCG00005550 NA coding upstream 25183 3739408 ~ 3740831 (+)
AMCG00005551 wsb1,LOC107756317,LOC107746651,LOC107682796,LOC107592922,LOC107587373,LOC107672108 coding upstream 43118 3706653 ~ 3722896 (+)
AMCG00005523 NA coding upstream 113299 3648847 ~ 3652715 (+)
AMCG00005526 NA coding upstream 121893 3642889 ~ 3644121 (+)
AMCG00005522 NA coding upstream 128203 3633733 ~ 3637811 (+)
AMCG00005559 NA coding downstream 10689 3799267 ~ 3807613 (+)
AMCG00005557 NA coding downstream 88836 3877414 ~ 3878187 (+)
AMCG00005556 LOC107690467,LOC107718289,LOC107664918,LOC107743726,LOC108425789,LOC107585604 coding downstream 97755 3886333 ~ 3889661 (+)
AMCG00005567 LOC107718289,LOC105897181 coding downstream 129778 3918356 ~ 3993279 (+)
AMCG00005535 LOC107690431,LOC107592631,LOC107743685 coding downstream 431303 4219881 ~ 4227690 (+)
G152764 NA non-coding upstream 4187 3723913 ~ 3761827 (+)
G152657 NA non-coding upstream 505585 3260210 ~ 3260429 (+)
G152656 NA non-coding upstream 565827 3199332 ~ 3200187 (+)
G152655 NA non-coding upstream 579026 3183821 ~ 3186988 (+)
G152644 NA non-coding upstream 675359 3071950 ~ 3090655 (+)
G152866 NA non-coding downstream 470288 4258866 ~ 4260635 (+)
G152906 NA non-coding downstream 503452 4292030 ~ 4292882 (+)
G152943 NA non-coding downstream 743743 4532321 ~ 4534824 (+)
G153080 NA non-coding downstream 1401949 5190527 ~ 5190796 (+)
G153082 NA non-coding downstream 1407210 5195788 ~ 5201535 (+)
AMCG00005498 lyrm9,LOC102789908 other upstream 495170 3266374 ~ 3270844 (+)
G152588 rpl23a other upstream 916406 2845217 ~ 2849608 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other upstream 1255338 2503910 ~ 2510676 (+)
AMCG00005429 ywhae,LOC106567579,LOC105005922 other upstream 1819214 1929455 ~ 1946800 (+)
G152337 NA other upstream 1962111 1799811 ~ 1803903 (+)
AMCG00005538 NA other downstream 493939 4282517 ~ 4305156 (+)
AMCG00005546 acaca,LOC107691719 other downstream 771635 4560213 ~ 4563020 (+)
AMCG00005583 LOC106603777,LOC105895333,LOC108428505 other downstream 1426235 5214813 ~ 5241776 (+)
AMCG00005647 NA other downstream 2645943 6434521 ~ 6437078 (+)
AMCG00005667 NA other downstream 2699140 6487718 ~ 6488782 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_17954672_17977093 KSR1, KSR1A coding CI01000304 null 17953117 ~ 17977761 (+)