AMCG00005592 (atp2a3,LOC106567410)


Basic Information

Item Value
gene id AMCG00005592
gene name atp2a3,LOC106567410
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 5612644 ~ 5617109 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005592
ATGGATGTTGGTGACAAGGTCCCTGCAGACATCAGGATTACCTCCATCAAATCAACTACTCTCAGAGTGGACCAGTCCATTCTCACAGGGGAATCTGTGTCGGTCATTAAGCACACTGACCCAGTGCCTGACCCCAGAGCTGTCAATcaagacaagaaaaacatgCTCTTTTCGGGGACCAACATTGCCGCTGGCAGGGCCATCGGAGTGGTGGTGTCCACAGGCGTCTCCACAGAGATCGGCAAGATCCGCAACCAGATGGCGGCCACGGAGCAGGAGAAGACGCCGCTGCAGCAGAAACTGGACGAGTTCGGCGAGCAGCTGTCCAAGGTCATCTCGCTGATCTGCGTGGCCGTGTGGGTCATCAACATCGGCCACTTCAACGACCCGGTGCACGGCGGCTCCTGGTTCCGCGGCGCCATCTACTACTTCAAGATCGCCGTGGCCCTGGCTGTGGCCGCCATCCCCGAGGGGCTGCCCGCCGTCATCACCACCTGCCTGGCGCTGGGCACCCGCCGCATGGCCAAAAAGAACGCCATCGTGCGCAGCCTGCCCTCCGTGGAGACGCTGGGCTGCACCTCCCTGCGGATGTGCAGTCTTTGCTAG

Function

symbol description
atp2a3 Predicted to enable P-type calcium transporter activity. Predicted to be involved in calcium ion transmembrane transport and cellular calcium ion homeostasis. Predicted to act upstream of or within calcium ion transport. Predicted to be located in membrane and sarcoplasmic reticulum. Predicted to be active in sarcoplasmic reticulum membrane. Predicted to be integral component of membrane. Is expressed in Purkinje cell. Orthologous to human ATP2A3 (ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3).

NR:

description
PREDICTED: sarcoplasmic/endoplasmic reticulum calcium ATPase 1-like isoform X1

GO:

id name namespace
GO:0070588 calcium ion transmembrane transport biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005388 calcium transmembrane transporter activity, phosphorylative mechanism molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005592 True 606 mRNA 0.61 5 5612644 5617109

Neighbor

gene id symbol gene type direction distance location
AMCG00005591 atp2a3 coding upstream 8123 5595171 ~ 5604521 (+)
AMCG00005593 NA coding upstream 19462 5577417 ~ 5593182 (+)
AMCG00005622 zzef1,LOC107598082 coding upstream 65615 5514040 ~ 5547029 (+)
AMCG00005623 ankfy1 coding upstream 104494 5493184 ~ 5508150 (+)
AMCG00005621 UBE2G1,ube2g1a,ube2g1,LOC107597432 coding upstream 123074 5479508 ~ 5489570 (+)
AMCG00005590 atp2a3,LOC102312511 coding downstream 9597 5626706 ~ 5639936 (+)
AMCG00005589 NA coding downstream 31352 5648461 ~ 5666868 (+)
AMCG00005603 dhx33 coding downstream 120681 5737790 ~ 5744821 (+)
AMCG00005602 NA coding downstream 128348 5745457 ~ 5747836 (+)
AMCG00005604 NA coding downstream 135428 5752537 ~ 5772059 (+)
G153154 LOC106602867,LOC107597455 non-coding upstream 167387 5444379 ~ 5445257 (+)
G153118 LOC106602865,LOC108260233,LOC108429749,LOC105010822,LOC103035912,LOC105896079 non-coding upstream 288721 5321060 ~ 5323923 (+)
G153113 NA non-coding upstream 303553 5307945 ~ 5309091 (+)
G153082 NA non-coding upstream 411109 5195788 ~ 5201535 (+)
G153080 NA non-coding upstream 421848 5190527 ~ 5190796 (+)
G153271 NA non-coding downstream 183539 5800648 ~ 5800892 (+)
G153274 NA non-coding downstream 299726 5916835 ~ 5955451 (+)
G153312 NA non-coding downstream 431021 6048130 ~ 6048438 (+)
G153348 LOC107090330,LOC102220786 non-coding downstream 615050 6232159 ~ 6234047 (+)
G153381 NA non-coding downstream 665879 6282988 ~ 6331371 (+)
AMCG00005583 LOC106603777,LOC105895333,LOC108428505 other upstream 370868 5214813 ~ 5241776 (+)
AMCG00005546 acaca,LOC107691719 other upstream 1049624 4560213 ~ 4563020 (+)
AMCG00005538 NA other upstream 1307488 4282517 ~ 4305156 (+)
AMCG00005498 lyrm9,LOC102789908 other upstream 2341800 3266374 ~ 3270844 (+)
G152588 rpl23a other upstream 2763036 2845217 ~ 2849608 (+)
AMCG00005647 NA other downstream 817412 6434521 ~ 6437078 (+)
AMCG00005667 NA other downstream 870609 6487718 ~ 6488782 (+)
AMCG00005663 NA other downstream 991534 6608643 ~ 6662480 (+)
G153675 NA other downstream 1643568 7260677 ~ 7265971 (+)
AMCG00005694 NA other downstream 1689949 7307058 ~ 7334571 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000006_09282220_09315540 ATP2A2.S, ATP2A2, ATP2A2A, ATP2A2B coding CI01000006 null 9280855 ~ 9316496 (-)