CI01000006_09282220_09315540 (ATP2A2.S, ATP2A2, ATP2A2A, ATP2A2B)


Basic Information

Item Value
gene id CI01000006_09282220_09315540
gene name ATP2A2.S, ATP2A2, ATP2A2A, ATP2A2B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 9280855 ~ 9316496 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_09282220_09315540.mRNA
AAATTAGGCCCACAACAGCTAAGTTACAAAGGCAACGTTCTTATTTTCATTAACTTAATGTACTGAAATACACAACAAACTTACTAAACCTTCAACTAAAATTAAAATATAAAATAAAAAAAATAATAATTCAACGTATTTGTAAAAACGTTTAGGTCGTCAACGAATCGTATGTAGCGAATCGGTTGTATATGATTCATCAATATTCACTGTCGCCACCTACCGGCGTAACCTGCAGAAAATGGCACGGAACGAGTGAATGAATCTTTTTGGTGAGTCCATGGCATGAATCAAACCCCCTACCGTCTCTAGATTGTGCATACTAGGGAACTATCTTTGCTACACCGCACCTTTCTTCAACTGGAGTGACGTCGGCCAAAGCAAGGAGGGTCAGCTGATCCACAGTGACGTGACGAAGAAAAGTCAAAGGAAGAAACGGGATTTCCGGAGTCCGGGCAGCCAATGAACGCATTCCACATGCGGACAGCGAGAGCTTTGCATGCGGATCAGGAGAGCGGCGGAACGGAGACACGCGATTGGTGCTGATGGTGCTAGAGCTGCGAACACCGGCAGTGTGCTGCGATTCAAGGGAATGAGCCAAGGATAGATCTGAAATACTATTTTAGGGTTATTTAACACATCATAAGGACACTAGGACTCCCATCAGGCATCGAAACATTTTAAGATCAAGAACAACTAGCGAGTTCACGATGTCTGTTGCGTAATTTTTGGTTGAATAAGTCCGGTTTAATAACTTTTCTTCTAATTAAACGCCCGAACTAAAAAGTTAAAATTGGCGATCATCGCGTGCTGTTTATCTTAAGTCACTACGGTTGTTTTTGGATCAAGTTTTTCGTGGATCCGAAGATCCTCTGAGTCAGGACTGAAGGCTTTGAAGAAGCCCGTTTTTGGGGGGTTGCGAGTCTGTTCATAATCAGCGTGTCCGTCCGTCCACGATGGAGAACGCACACACGAAAACCGTGGAGGAAGTTTACAGCTATTTCTCCGTGAATGAAAGCACTGGGCTCGGCCTGGAGCAAGTGAAACGGCAGCGGGAGAAATGGGGACCGAACGGAAAATCACTGTGGGAGTTGGTGGTGGAACAATTTGAGGATCTTTTAGTGAGGATTCTTCTCCTGGCAGCTTGCATATCTTTTGTACTGGCCTGGTTTGAAGAGGGAGAGGAGACCATTACAGCGTTTGTGGAGCCTTTTGTAATATTGCTAATTCTTATAGCCAACGCCATTGTAGGTGTCTGGCAGGAGAGAAACGCAGAAAATGCCATTGAGGCCCTCAAGGAGTACGAGCCCGAGATGGGCAAAGTCTATCGCCAGGACAGGAAGACTGTACAGAGGATCAAAGCCAGAGACATTGTACCCGGGGACATTGTGGAAGTTGCCGCAGGCGTCGGTTTAGTCCCATCAGCAGCAGTGGAGGAAAAGGCTTTTGGAAGACAAGTTGTCTGCATGAGCATATCCAGCCCTGTGTGTTTATGTTCCCGGGTCGTCGCTGCATTTGCGGTCTCTCACTTGGGTGACAAAGTTCCTGCTGACATTCGCTTGACTTCCATCAAGTCAACGACCCTGAGGGTGGACCAGTCCATTCTAACAGGAGAATCTGTGTCAGTAATCAAGCATACAGACCCTGTCCCTGACCCCCGTGCTGTGAACCAAGACAAGAAGAACATGCTCTTCTCTGGTACCAACATTGCCGCAGGCAAAGCGGTGGGTGTAGTGATCGCCACTGGTGTGAACACAGAGATTGGCAAAATCCGTGATGAGATGGCATCCACGGAGCAGGAGCGCACGCCTCTGCAGCAGAAACTGGACGAGTTCGGCCAGCAGCTGTCCAAGGTCATCTCGCTCATCTGCATCGCCGTGTGGATCATCAACATTGGACACTTCAACGATCCCGTTCACGGTGGCTCATGGATCCGCGGGGCCGTATACTACTTCAAAATCGCGGTCGCGCTGGCTGTGGCCGCCATCCCCGAAGGCCTGCCCGCCGTCATCACCACCTGCCTGGCTCTGGGTACCCGTCGCATGGCCAAGAAGAACGCCATTGTACGCTCTCTGCCCTCGGTGGAGACCCTGGGCTGCACCTCCGTCATCTGCTCGGATAAAACCGGCACACTTACCACCAACCAGATGTCCGTTTGCAGGGATTCATTTCAAAGGATGACATGGTTTATTTGTCTATTTCTCCCCCTCATCGTGTCCCTGTATACTCCTCATCTTTTGTCATCCTCGTCATCTGTTCTTCTCTCTCTGTTCGTCTCCACCTTAAGTGCGAGATCTGATCAGTATGCGGTAATGTTCATTGTGGATCAGGCAAATGGAAACAGCTGCTCTCTGAAAGAGTTCACCATTACTGGCTCCACATATGCCCCTGATGGACAAGTGTTTCATGAGGGTAAACCAGTGCGATGCTCACAATACGATGGTCTGGTTGAATTGGCTAGCATCTGTGCTCTGTGCAACGACTCATCTCTAGATTACAACGAGGCCAAAGGTGTGTACGAGAAGGTGGGAGAAGCCACAGAGACTGCTCTAACATGTCTGGTGGAGAAAATGAATGTGTTCGACACACAACTGAAGGGCCTTTCCAAGGTTGAGAGAGCGAACGCGTGCAACTCGGTCATCAAACAGTTGATGAAAAAGGAGTTCACTCTGGAGTTCTCCCGAGACAGAAAGTCCATGTCAGTGTACTGTACTCCCAACAAAGCTCGCTCATCCATTGGCAAGATGTTTGTTAAGGGTGCTCCAGAGGGAGTGATTGACAGATGCACGCACATCCGTGTGGGTGGGAATAAAGTTCCCCTGACAGCAGGTATTAAAGAGAAGATCATGTCTGTGATCCGTGAGTACGGCACAGGACGTGACACGCTGCGCTGTCTAGCTCTGGCCACCCGAGACAACCCATTGAGCAAAGAGAGCCTTGTACTGGAGGACTCAAACCGGTTCATTGAGTATGAGACGGACCTGACCTTTGTGGGATGCGTGGGCATGCTGGATCCACCCAGAGCTGAGGTGGCAGCTTCCATCAAACTGTGTCGTCAAGCGGGTATTCGAGTCATCATGATCACCGGCGACAACAAGGGCACAGCTGTCGCCATCTGCAGGCGCATCGGCATCTTTGGTGAGGAGGACGATGTCTCTCGTATGGCCTACACTGGCCGAGAGTTCGACGACCTGTCTGCTACCGCCCAGCGTGAGGCAGTGATCACTGCCCGTTGCTTTGCCCGTGTTGAGCCATCTCACAAATCCAAGATTGTGGAGTTCCTGCAGTCCTACGATGAGATCACTGCAATGACTGGAGATGGTGTGAACGATGCACCTGCTCTGAAAAAGGCTGAAATTGGCATTGCTATGGGGTCAGGCACAGCGGTGGCTAAGACTGCTTCAGAGATGGTCCTTGCCGATGATAACTTTGCTACCATCGTGGCCGCTGTGGAAGAGGGTCGAGCCATTTACAATAACATGAAACAATTCATCCGCTACCTCATTTCCTCAAATGTCGGCGAGGTGGTCTGTATTTTCTTAACGGCAGCTCTGGGCTTCCCCGAAGCTCTGATTCCAGTTCAGCTGCTGTGGGTGAATCTGGTGACCGACGGTCTGCCTGCGACCGCTCTGGGCTTCAACCCACCCGACCTGGACATCATGAGCAAACCCCCTCGCAATGCCAGGGAGCCCCTTATCTCTGGCTGGCTCTTCTTTAGATACCTGATCATTGGCTGTTATGTAGGTGCTGCTACTGTAGGTGCTGCTGCATGGTGGTTCATTGCTGCTGATGATGGGCCTAGAGTCACCCTCTATCAACTGAGCCACTTCCTTCAGTGTGCACCAGACAACCCTGATTTTGAGGGCCTGAAGTGTGAAGTATTTGAGTCTCCCTATCCAATGACCATGGCCCTGTCCGTACTAGTAACCATTGAGATGTGCAACGCCCTCAACAGTGTTTCCGAGAACCAGTCACTGCTTCGCATGCCCCCCTGGGATAATGTGTGGCTGCTAGGAGCCATCTGCCTCTCCATGTCCCTCCACTTCTTTATCCTTTACGTGGAGCCCCTGCCGATGATCTTCCAGATCACTCCACTGAACGTGACCCAGTGGCTTATGGTGTTGAAGATTTCCCTGCCCGTCATCTTGCTGGATGAATTGCTCAAGTTTGTGGCCAGAAACTACCTGGACAAGCCCAAAGACCTGGACAAGCCCAAGGGCATGGCATGCTCACTCAGCACCTGCACGGAGGGCATTTCCTGGCCCTTTGTGGCCCTTTCACTCCCCCTGGTGCTGTGGCTCTACAGCACTGACACTAACTTGGCCGAAATGTTCTGGTCTTGACTGAAATGAGCACAGATGTGTGTAGATGGTGTGTACGTATGTCTGTATGTGTGGTTGTGCGTTTAAAGTGTGCCTCCGCAAACAGCGAATGTGTACGAGAAGGACAGGATTAACACAAAAATAACCTTAAGATAGAAATATAATTTTTTTTTTCTTTTCTTTTTTCTTTTTTTTTTTTTAACTGTCCGTTGGTGATTGAAGAGACCGTACAGACCTGAAGTCTTCAAGTATTAGTGACCATTAATAATTTTTTGGACTTCTTGTTGGTTTCTTTTGAAAGCAGTCTTTTGTTATTGCATTTTTAATTAATCATTTGTCTCGTCTCATTTCAAAACAGTATCAATAATGGTAATATCCACTTTGTTTCCCCCCCCATATCATGTGTTCAAATTGCTGAATGGAGAAAAGTGCTTGTGTACAGACATTTAACACTATTTTATGCAGTTGTTCATTTGTTATTATTTGTTTATTTTGCTAACAGAGTAGAGTGGGTAGGGTAGAAAAAGAGAAAGAAAGAACAAGACAGAAGAACTGTTTACTAATGTTTACCTTTGTGTCTTCGGCGTGAACATCGCTCCGAGCCAATGGACAAGCATGGTGTTGCAAAGCAGCATGGGAAAGAGAGTATGGGACTGAATGTTTGAATGCTTCACGGTCAAATTCTCAGATGAAAACTGCATGTTATGTATTTCGCATGCATTTTGTGTGGTTTTTCATGTATGATTTGTACCTGTATGTCTTTCCCTATGTGTAATAACTTCCATTTTTTTTATGGTGATACATTTTGTTTCCACTATTACCTGACACTTTTGATTAGTAAAGCCAGTTTTTCTGCACTAGGCAGAGTACAGCTACCTCAGGACTGTCAGATTCGACTCTCTCTGGTTGCTTCCTCCCCCCACTTAGCTTTACACCGCTTGTACACATTACTGCATGAGGTGTGCCTCTATTTGAAAACTCAGATTCTTTTGGCCCTAACAAATCTGTTTTAAGTCTTTTTTTCCCTGTGTGTTTGTTTTCACTGTATTTTATAATTGAATGAATTTGCATTAACTTAATTGAGAGGTTTTCTTTTGTTTTGGGGTGGGGTGGGTTGGACAAAAGATGTAAATGTTACCGTTTACTGGGTTCAGGTCAGAGACAAAGGAGTAGAAAATTAAACAAGCAAGGGTTTAGGTGTTGCATTCAAAACGTGAATTTTACAATGCAAAACCAAAATGTTTCATGCTACCTTTTTTTTCTACTTTTAAGAAAATGCACTCATGAACCATTTGAATTAAAAAGCGTGTCTTCATTTTACTAGCTGGTCTGTTCCTTCCTACAATGCAACACGGCAAGTTTTAGGAGCAATTATACTTGAATAAA

Function

symbol description
atp2a2b Predicted to enable P-type calcium transporter activity. Acts upstream of or within determination of heart left/right asymmetry. Predicted to be located in membrane and sarcoplasmic reticulum. Predicted to be active in sarcoplasmic reticulum membrane. Predicted to be integral component of membrane. Is expressed in axis; myotome; pectoral fin; and pectoral fin musculature. Human ortholog(s) of this gene implicated in acrokeratosis verruciformis; essential hypertension; keratosis follicularis; and pulmonary hypertension. Orthologous to human ATP2A2 (ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2).
atp2a2a Predicted to enable P-type calcium transporter activity. Acts upstream of or within heart looping and regulation of heart contraction. Predicted to be located in membrane and sarcoplasmic reticulum. Predicted to be active in sarcoplasmic reticulum membrane. Predicted to be integral component of membrane. Is expressed in cardiovascular system; musculature system; pectoral fin; polster; and somite. Human ortholog(s) of this gene implicated in acrokeratosis verruciformis; essential hypertension; keratosis follicularis; and pulmonary hypertension. Orthologous to human ATP2A2 (ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2).
atp2a2 Enables several functions, including P-type calcium transporter activity involved in regulation of cardiac muscle cell membrane potential; S100 protein binding activity; and protein C-terminus binding activity. Involved in several processes, including calcium ion transport from cytosol to endoplasmic reticulum; macroautophagy; and mitochondrion-endoplasmic reticulum membrane tethering. Located in endoplasmic reticulum membrane and longitudinal sarcoplasmic reticulum. Part of calcium ion-transporting ATPase complex. Colocalizes with intercalated disc. Implicated in acrokeratosis verruciformis; essential hypertension; keratosis follicularis; and pulmonary hypertension.

GO:

id name namespace
GO:0005388 calcium transmembrane transporter activity, phosphorylative mechanism molecular_function

KEGG:

id description
K05853 ATP2A; P-type Ca2+ transporter type 2A

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_09282220_09315540.mRNA True 5708 mRNA 0.47 21 9280855 9316496

Neighbor

gene id symbol gene type direction distance location
CI01000006_09205576_09277358 BCR coding downstream 2701 9205576 ~ 9278154 (-)
CI01000006_09197554_09198425 NA coding downstream 82430 9197275 ~ 9198425 (-)
CI01000006_09161066_09181709 TSC1B, TSC1 coding downstream 99146 9160927 ~ 9181709 (-)
CI01000006_09019351_09023876 STOM coding downstream 256979 9019276 ~ 9023876 (-)
CI01000006_08866054_08871468 NA coding downstream 409387 8866019 ~ 8871468 (-)
CI01000006_09326410_09330229 ARPC3, ARPC3.L coding upstream 9734 9326230 ~ 9330262 (-)
CI01000006_09330816_09334587 ATPBB, GPN3 coding upstream 14120 9330616 ~ 9334765 (-)
CI01000006_09338560_09342684 VPS29 coding upstream 21769 9338265 ~ 9343783 (-)
CI01000006_09383325_09387907 AQP3B, AQP3 coding upstream 66774 9383270 ~ 9387907 (-)
CI01000006_09857830_09868080 NA coding upstream 541320 9857816 ~ 9868237 (-)
G46428 NA non-coding downstream 122924 9157698 ~ 9157931 (-)
G46420 NA non-coding downstream 135370 9145256 ~ 9145485 (-)
G46419 NA non-coding downstream 136098 9144452 ~ 9144757 (-)
G46410 NA non-coding downstream 147094 9133309 ~ 9133761 (-)
G46396 NA non-coding downstream 176995 9103550 ~ 9103860 (-)
G46439 NA non-coding upstream 33563 9350059 ~ 9350304 (-)
G46445 NA non-coding upstream 59163 9375659 ~ 9375862 (-)
G46444 NA non-coding upstream 64666 9381162 ~ 9413493 (-)
G46455 NA non-coding upstream 99524 9416020 ~ 9416291 (-)
G46465 NA non-coding upstream 112795 9429291 ~ 9429577 (-)
CI01000006_07500281_07507754 NA other downstream 1769899 7500246 ~ 7507976 (-)
CI01000006_06974359_06976736 NA other downstream 2303983 6973224 ~ 6976872 (-)
CI01000006_04560607_04560993 NA other downstream 4718787 4559509 ~ 4562068 (-)
G43549 NA other downstream 4925427 4352510 ~ 4355428 (-)
G43102 NA other downstream 6346871 2908451 ~ 2933984 (-)
CI01000006_10453630_10483241 NA other upstream 1166360 10453613 ~ 10484006 (-)
G47658 NA other upstream 1714415 11030911 ~ 11033127 (-)
CI01000006_11651067_11653761 SMD3, SNRPD3, SNRPD3L, MGC52856 other upstream 2333867 11650363 ~ 11654424 (-)
CI01000006_12348300_12348961 GLRX other upstream 3017913 12347180 ~ 12349383 (-)
CI01000006_12569291_12581457 CELL, CEL.2, CEL.1 other upstream 3034263 12569205 ~ 12582487 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00005592 atp2a3,LOC106567410 coding CM030142.1 CM030142.1 5612644 ~ 5617109 (+)