AMCG00005711 (cct6a)


Basic Information

Item Value
gene id AMCG00005711
gene name cct6a
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 7980099 ~ 7984901 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005711
ATGACCGCCGTGAAAGCGCTGAACCCGAAGGCCGAGGTGGCCCGAGCCCAGGCGGCCCTGGCCGTGAACATCAGCGCGGCCCGCGGGCTGCAGGACGTGCTGAGGAGCAACCTGGGACCCAAAGGCACCATGAAAATGCTGGTGTCTGGCGCGGGTGACATAAAGCTGACCAAAGATGGTAATGTCCTGTTGCACGAAATGCAAATCCAGCACCCGACAGCCTCTTTGATCGCCAAGGTGGCCACGGCTCAGGATGACATCACGGGAGATGGCACCACTTCCAATGTGCTCATCATCGGAGAGCTGCTGAAGCAAGCGGACCTCTATGTGTCTGAGGGTCTCCATCCCAGGATAATAGCGGAAGGATTTGAagctgcaaaagaaaaatctctTGAGCTTCTGGAGCAACTGAAAGTGACTAaggagatggacagagagatcCTCATCGATGTTGCCAGGACTTCTCTTCGCACTAAAGTCCACGTTGAGCTCGCTGACCTTCTAACAGAGGCCGTGGTTGATGCTGTTCTTGCGATCCAGAAGCCTAACGAGCCTATTGACCTCTTCATGGTGGAGATCATGGAGATGAAACACAAGACAGACAGCGACACAACCCTGATCAGAGGACTGGTCTTGGATCATGGTGCTCGACATCCCGATATGAAGAAGAGGGTTGAAGACGCTTTCATTCTGACGTGCAACGTGTCCCTGGAATATGAGAAGACtgaaGTGAACTCTGGGTTTTTCTACAAGAGTGCCAACGAGAGGGAAAAGCTCGTAAAAGCAGAGAGGAAGTTCATCGAAGAGCGAGTCAAGAAAATAATTGATCTGAAGAACAAAGTGTGCACTGATGATTCTAAAGGATTTGTCGTGCTTAACCAGAAGGGGATCGATCCATTTTCCTTAGACGCACTTGCAAAAGAAGGGATTGTCGCCCTTCGCAGAGCCAAGCGGAGAAATATGGAGAGACTTACTCTGGCCTGCGGAGGTATTGCTATGAACTCTGTGGATGACCTCACGCCAGACTGCTTGGGTCATGCTGGTCTTGTGTATGAGCACACTCTCGGAGAAGAGAAGTTCACGTTCATCGAGAAGTGTGGCAACCCCCGTTCAGTGACCCTCCTGATCAAAGGTCCCAACAAACACACCTTGACACAGATCAAAGATGCGGTCCGAGATGGGCTGCGCGCTGTCAAGAACGCCATCGAGGACGGCAGTGTGGTGGCCGGAGCTGGAGCTTTCGAAGTGGCTGTGGCCGACGCTCTGGTCAAACACAAGCCCAACGTGAAGGGCAGGGCTCAGCTGGGGGTGCAGGCCTTCGCCGACGCCCTGCTCATCATTCCAAAGGTTCTGGCCAAGAACTCTGGGTATGACCAGCAGGAGACCTTGGTGAAGCTGCAGATGGAGTACAAGGAGTCTGGGCAGCTGATCGGGGTCAACCTGAACACA

Function

symbol description
cct6a Predicted to enable unfolded protein binding activity. Predicted to be involved in protein folding. Predicted to be part of chaperonin-containing T-complex. Orthologous to several human genes including CCT6A (chaperonin containing TCP1 subunit 6A).

NR:

description
PREDICTED: T-complex protein 1 subunit zeta

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K09498 CCT6; T-complex protein 1 subunit zeta

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005711 True 1449 mRNA 0.53 12 7980099 7984901

Neighbor

gene id symbol gene type direction distance location
AMCG00005713 nips2,LOC106602830,LOC106581053,LOC105028784 coding upstream 4860 7967451 ~ 7975239 (+)
AMCG00005714 NA coding upstream 14032 7965059 ~ 7966067 (+)
AMCG00005710 sbds,LOC106581067 coding upstream 26885 7950506 ~ 7953214 (+)
AMCG00005690 wbscr17,LOC106581212,LOC106612816 coding upstream 169401 7799828 ~ 7810698 (+)
AMCG00005658 NA coding upstream 372185 7601285 ~ 7607914 (+)
AMCG00005712 sumf2,LOC107756135,LOC107700040,LOC107669403,LOC107715344,LOC107548208,LOC107567178 coding downstream 1620 7986521 ~ 7989375 (+)
AMCG00005700 NA coding downstream 18645 8003546 ~ 8021628 (+)
AMCG00005730 NA coding downstream 73265 8058166 ~ 8092468 (+)
AMCG00005732 NA coding downstream 114894 8099795 ~ 8100178 (+)
AMCG00005731 NA coding downstream 116395 8101296 ~ 8101907 (+)
G153747 NA non-coding upstream 92319 7887566 ~ 7887780 (+)
G153702 NA non-coding upstream 618782 7360384 ~ 7361317 (+)
G153689 NA non-coding upstream 681587 7298154 ~ 7298512 (+)
G153687 NA non-coding upstream 682718 7297134 ~ 7297381 (+)
G153626 NA non-coding upstream 822224 7102205 ~ 7157875 (+)
G153816 NA non-coding downstream 266400 8251301 ~ 8278074 (+)
G153859 NA non-coding downstream 360777 8345678 ~ 8351749 (+)
G153955 NA non-coding downstream 744902 8729803 ~ 8730155 (+)
G154025 NA non-coding downstream 797088 8781989 ~ 8805304 (+)
G154030 NA non-coding downstream 808926 8793827 ~ 8796424 (+)
AMCG00005660 LOC106603524 other upstream 192228 7749183 ~ 7787871 (+)
AMCG00005694 NA other upstream 645528 7307058 ~ 7334571 (+)
G153675 NA other upstream 714128 7260677 ~ 7265971 (+)
AMCG00005663 NA other upstream 1317619 6608643 ~ 6662480 (+)
AMCG00005667 NA other upstream 1491317 6487718 ~ 6488782 (+)
G153815 NA other downstream 229003 8213904 ~ 8230590 (+)
AMCG00005720 NA other downstream 513601 8498502 ~ 8507097 (+)
AMCG00005787 NA other downstream 843677 8828578 ~ 8854100 (+)
G154251 NA other downstream 1450999 9435900 ~ 9438269 (+)
G154283 NA other downstream 1602901 9587802 ~ 9589798 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000014_00058937_00066714 CCT6A.S, CCT6A coding CI01000014 null 58727 ~ 66714 (-)