AMCG00005700


Basic Information

Item Value
gene id AMCG00005700
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 8003546 ~ 8021628 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005700
GCACATCTCGCACTTTCAATCACTTtctcttcatctcctcctcctcctcctcctcacctgaGAGTGGGACCGAAGCCCCGCCCAGCGGACCGCACTGCACGCCGGCGCCCCTCACACGGCTGCGCGGAAAGTCACGCTTCTGGTGCGTGTGGAGCCGGTGCGCCACAAAATGACAACGGACGACTTGGAACTAATAGAACAATAGTTTCTATCCCCGAATTGAAACAAAGTAAAGAGTCATGAGTCGTGTGTCCGACGCCTGGGGGTTCAAGTCCCACGCCATGGAGCCCGAGGAGGAGTTTTACGGCTTTGACCTGGACTCGGACGAGCTGTCCAGCGACCAGGACCCCGGCGAGCTGCTGGCGGCTCTCAAGCAGAAGGAAGAGGAGCTGGTTCTGGCCGCCAGTCTGGGCAACGCGCTGCTGCTGGAGAACCGGCAGCTCAAAGAGGACAACCAGCGACTTCAGGAGCAGTTCACGGACAGGCTGGAGgagctggagcagggcAAGCACGAGCTGCGGCTGAGGCTGGAGGGCCGGCAGTCGGAGTGGGAGAGCCAGGTGGCCGAGCTGGAGAAGGACACCAGGGAGCTGGGCCGGCAGGTGGATCGGCTGACCCGGGCCCTGCGCCAGTCCGAGCAGGAGAAGAGCCAGGCGGAGCGAGAGCACGGGGAGCACTGCGGCCGCCTTATCGAGCAGCTCAACAAGGCGGTGGCGGTGGAGAGGGCTCTGACGGCCGAGCTGCAGGCGGTGAAGGAAACACTCCGGGAGAAGAGCGACGTGGGTGGGAGGGACGAGGAGGTCCTGCAGTCCCTGAGGGAACAGGTGGCGTCTCTGTCGGAGCAGAAGCTGGTGTTGGAGCGGCGCGTGGAGGCTGTGTTCCAGGAGAACAGCGCCTTGCAGGACAGCCTGGTGTCTCTGCGCAAGCGTGCTGCCCGGCTGGAGCAGGAGAGCCAGGAGCAGGGCCTGCAGCTGCAGGACTCGTGGCACGAGCTGGAGGCGGCCCGGGGACGTAGCCAGCTCTTGCAGGCCCAGGTGGAGGAGCTGCAAGAGGAGGCGTCTCTGCGGGGCAGCGGCTCGGGAGAGGGATCCCTGCTGTCGGAGCTCGAGCACAGTCTGGACAGCGAGCGCTGGGGCCTGGACCGGGAGCAGATGGCCGGAGAAGTGCTGTCCATTTTGGAGCTGCTGAACTCTGTGGTTAATCCAAGTGAGGACCGGCACCATTCAGACCCAGAGCGCCAGCTGGACAGTCTGCATGTGATGTTGGCGCAGATCAAGGAGATGGCACACAGCTTGGCTCAGCGCCAGTCCTCACAGGAGCTGAATCGCGCCAGTGTTCCTCCGACAAGCAATCCCTGTGAGAACGACAATCTGAGACGAGAGCTTCAGGATCAGATTGCCCGGCTGCAGCAGGAGAATGAGGAGTTGAGGCGGCGGATGGAGAACGTCGAGAGGGAGGGCGTCCTGCAGCAGGCCATCCGGGACCGCGACGAGGCCATCAGCAAAGACCATGATAAACCCATCTCTTCCCTCTGTGCTCATGTGCAGGAAGAACGCTATGGAGACGACATCCAGTTCATCATCAACCAGCAGCTGAAGAGCCAGCAGCAGAGCGACCAGGCCCAGAGGAGGCCGGCCCCTGCCACCGGGATCGGCCGGCTGGCGTTCCTGCGGCGCCCCAGCACCCCCACCCTCGCCCCGCGCCGTGTCTCCTCCGTGGCCTCCCTGAGTCCGGCGCCCGAGTCCCCTCTGCGCGGCCGGACCGAGGCGCCCTGGAGGGAGTGGCTGCGCAGAGGGAGGCTCGGCCAGCCCGGACACTAGCATGGCCCAGGGGGTACCAAGGGAACACCAACCGcgtggcttatttatttatttatgtctcgGATGGGGACATGGAGAGGTTCACGGTTTATATCTGGAAGGAAAGTagataaaataacaaagacagTCCGAAAGTCGCAGTTTCTGGATTCTGACACTAATTGTGACGCTTATAACTGTCTGGAAGCAAGTCTTATAGATAATGATGGGACACCTGGGTTTTCCTGTGAACGGCAGACATTCTCGcccgttttgtttgtttcatgccTGGATCAGAAAGTGGACTTGCAGAAACCCCCCAGACAGGCCCTTAGTTTTCTCCGCAGGACAGAGTCGCACCTAAGTGACCACAAGGCTTTTTGGGCGGGGGGGAGATGGACTAGAAAAGTTCTGCCACTTATCTGAGCACATGAATCGGCTGTATTCTCCTCTTTATTTTGGAAAGggatgttgtgtttttttttttttcttcgaaGCCGAGTAGTTTGCACTCGACGATTATGCCTGTTCAGTGTGGGGGAGAGGAGAGCAACACCGCCGAAGTATTCCACGAGTCGGAGAGGAAGTGatgtatattgtgtattatAGTTTTTATGGAAGGCACTAAAAGGCACATTTAAGTTTGAGACACtgtgggagagggaggagctTAAGTGAGGAAGACTGCGCTGGAGTCATGAAATGAAAGTGTTACAATGAAGCAAACCTCTCATTTACGAAGACAAGCGATCGGGACAGACATGAAGGACGGACCACGGTTAAGGAAGGACCAAAACATCCTGGATACGTCGGGGGTTTCGTAGTAACTCCCTGTGAACACTACCAACTGaagatgattatttttgttccaAATCTGCTGTATAAATGAAGtattttgtatgataagagTGATTGTTATTTAAGAGCAGAGGGTGTTACAGTGTACTGTAGCTCAATGCCATCTATTTCAGTGTTCATGTCAAGGTTTGTTActaattcatgtttatttcagGACGGTGTTTGTGGAGCTTGGCGGCCGGGGTTGTTGTTGAGTAACGCTGGCCTGGACAGATAACCTGCTAACCTAATAACCTGCTATTCAAGTAGGGGCTTACATTTGTCTAAAAACAACTTGTAATTTACACTTGAACaataaatatacttttgtaAGAGAACGAACAAGTGACAGCTTCTcatgagaaatgtaaatgagtTCGGTGTTTTTGAGGACTATACCTGAAAATGAAAGACTTTAAAGCCATGGTTTTGCTTGTACGTTTAAAAACCTCTATATCGCTGTAAGAGGTTGCACAGTGCGCTGAAGCATGTGCAAAATACATGCTTCTCCTCGTGCTGTAACTGCAGATTAAGGACACAGTCgcattgttttctgtgtaaatgAAGATGAGTAAATTCTTTTTGACAGTACGGG

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0071944 cell periphery cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005700 True 3231 mRNA 0.55 10 8003546 8021628

Neighbor

gene id symbol gene type direction distance location
AMCG00005712 sumf2,LOC107756135,LOC107700040,LOC107669403,LOC107715344,LOC107548208,LOC107567178 coding upstream 14171 7986521 ~ 7989375 (+)
AMCG00005711 cct6a coding upstream 18645 7980099 ~ 7984901 (+)
AMCG00005713 nips2,LOC106602830,LOC106581053,LOC105028784 coding upstream 28307 7967451 ~ 7975239 (+)
AMCG00005714 NA coding upstream 37479 7965059 ~ 7966067 (+)
AMCG00005710 sbds,LOC106581067 coding upstream 50332 7950506 ~ 7953214 (+)
AMCG00005730 NA coding downstream 36538 8058166 ~ 8092468 (+)
AMCG00005732 NA coding downstream 78167 8099795 ~ 8100178 (+)
AMCG00005731 NA coding downstream 79668 8101296 ~ 8101907 (+)
AMCG00005709 NA coding downstream 179992 8201620 ~ 8216650 (+)
AMCG00005708 NA coding downstream 195162 8216790 ~ 8230590 (+)
G153747 NA non-coding upstream 115766 7887566 ~ 7887780 (+)
G153702 NA non-coding upstream 642229 7360384 ~ 7361317 (+)
G153689 NA non-coding upstream 705034 7298154 ~ 7298512 (+)
G153687 NA non-coding upstream 706165 7297134 ~ 7297381 (+)
G153626 NA non-coding upstream 845671 7102205 ~ 7157875 (+)
G153816 NA non-coding downstream 229673 8251301 ~ 8278074 (+)
G153859 NA non-coding downstream 324050 8345678 ~ 8351749 (+)
G153955 NA non-coding downstream 708175 8729803 ~ 8730155 (+)
G154025 NA non-coding downstream 760361 8781989 ~ 8805304 (+)
G154030 NA non-coding downstream 772199 8793827 ~ 8796424 (+)
AMCG00005660 LOC106603524 other upstream 215675 7749183 ~ 7787871 (+)
AMCG00005694 NA other upstream 668975 7307058 ~ 7334571 (+)
G153675 NA other upstream 737575 7260677 ~ 7265971 (+)
AMCG00005663 NA other upstream 1341066 6608643 ~ 6662480 (+)
AMCG00005667 NA other upstream 1514764 6487718 ~ 6488782 (+)
G153815 NA other downstream 192276 8213904 ~ 8230590 (+)
AMCG00005720 NA other downstream 476874 8498502 ~ 8507097 (+)
AMCG00005787 NA other downstream 806950 8828578 ~ 8854100 (+)
G154251 NA other downstream 1414272 9435900 ~ 9438269 (+)
G154283 NA other downstream 1566174 9587802 ~ 9589798 (+)

Expression


Co-expression Network