AMCG00005708


Basic Information

Item Value
gene id AMCG00005708
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 8216790 ~ 8230590 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005708
ATGGCTCCGTCTCAGAGTCTGAACCGCGAGGTCGTGTCTCCAGTCCAGGCGGGTCTGACGGCGTTCCTCTCATGGGTACGGGAGGACAGCCAGTTGGTGGTATTGGTGttggTGCTAAAGCTTCCAAACCTGCAGGTGGATACCCGTATGGAGGAGGGTACCCGACTGGCACAGGATATGGGGGTGTGCAACCTGGGGGCATCCTGCCTGGAGGAGTGCAACCTGGGGGCATCCTGCCTGGAGGAGTGCAACCTGGGGGTGTCCTGCCTGGAGGAGTGCAACCTGGGGGCGTCCTGCCTGGAGGAGTGCAACCTGGGGGCGTTCTGCCTGGAGGAGTGCAACCTGGGGGTGTTCTGCCAGGGGGCGTGCAACCTGGAGGCGTGCGGTATCCAACGGGTGTGGGACTGGGCGCCAAACCACCCAAGCCAGTTCCTGGTTATGGAGGATACCAACCTGCCGCAGGAGCGGGAGCTCAGCAgaaatgcagacagacagaACCAAAAAGAAGGATATCCTCAAGTCCCGGGGGCTGGACAGCTAGctAAACCCTCCAAACAGTACGGGCAGCTGCTGGGAATGCTGGGAGCTTACAGAGGGGCGGGCGGATGTCCCCAGGGCAAATACTGCgggaaaaggagaaaataaaagaccTCTTGAGAAAAAAGTGACCTCGAGAAATTACGGTGCTACTGCATGATCTAGAATGTACATTTCTTTCacctataaaagaaaaaaaaatcccttttcatgtaaaaaaaaaaaaaacaacatgaaccCTTTTggtgattttttaaattccacaaAGCCAGAGGAATATttgacagaacaaaaaaaaatgatttaatgcagTACTTTGTACTATGAATATCCTACGAATGCCTGTAGCATACTACATTTTATAACTGATGTTAAATGGTGTATTTTGATGGATGTTTCTGTGCCAtactaattttattaaatgcCTGGAGTATATCAGTTCTCCAAAGCTTTTTTATGCACAAAACCAGCTGTGTGTTGTTCGGCAGTGAGCAATGCCAGAAACACAACCTTTACTGTCCTTTTGTCTGGATGTAGGAAAGGTTACACATCAGGTTTCTGCATAGaaaaattaacacaaaacataGAGGAAGTCTCTCTAAGAGGGATTTACACTACTCTGAAAGCATGCAGAACTACCTGTACACACATAATATTTCATTCCTTAGTGTGTATTAGCGTGATGTTTAAAGAAAACGAATGCGGCTGGTTTGTTTAAGCATGGAAGTATTCAGGGGCGGATATATTTTGGGCATTTGGAGCGATGAGTTATCTGTTACCGCATTCGCACAATTTGACACCCACCGTGGAGAGAGCAGTCTGTCAGATTATTTCTCTCTGCCATGGTACAGTCCCGAggttttgcatttagttaaaatATGATGAGCTTTCTGCTCTGAAGACGAGTCTAAGCAAACTTCAAAGGAAAGGTGACACGAACACCTGACGCTGAGCTGAGATGTTGTTTGCTTTGGTTTGCATCATTTATAAAAGATTAGGGAAATATTTCTtctggctttttgtttttgttgttttccaagaATGAAACACTCAAGTTGCACAAAGAAAAGCTAAATTAGGACAACACCACCATGGTTTGGGCCtgtatattgtgtatgtatgaatgaCAACTTTGAAGCtattaattttataatacagTTTTCCTCAGAAGGGTGGCGGGGGGGTGAATAATAGGTGCTTAAGTCAGTCAAGCTTGAATGTCTGTCTTAAGACAATCATTTAATGGTTTACACTTTCACAGTTCATTTATGTTTCAATACATCTTCATACTGTTGGGTGATAAACCTACCAAGCTCTTAAAACATACTGGTCTTTTCCTTCCAgctgtatttttgttgtattttgcatCATTCTAAACTTGActttaaagattaattaaaagaaaccatTCTAAATTTtgtaaatgatatatatatataaaaagatcagtagggcttttttttctcttctttgctcatgcatttcttttttatcacTGTGGAGAACTGTTGGTAAATGATGCTAAttagttattgttgttttttattgttgttttcattttgggaGCAATTGTTTTGGTCATTTTCCTAGCAATGTATATGGTGCTAACATAGTTCATATAAAATAGTTTCCATTGCTTGAACATGacgtttttaaaagaaaacagagaagGAAAACTACAGTTGGTTTCTTCTTGGCACACCCTATGGCAAAACCTTCTCCAGGGATCTAGACCATATCTCACAGGTTAAATTGTTCTGCCTATAGGATTAACTACAATAACCGTCTCTGCTTTCcttattttaaaccaaacagTACTGTATGTGGACTGTCTTTGAGCCCTGCCATAAACCTGTCTTTGTCTACAGTCGtgtgggtttttctttttctttttttgtaccTGTTTATAAAATGGTTTAGGGGGACATTGCACTTTTCCCCCCACCACAATGCACATCTTAATAATACTGGGAAAGACCGCCATTTAAACTGCTTCAGTCAATaattaataaactgaaatattttaaagagaaa

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005708 True 2571 mRNA 0.42 12 8216790 8230590

Neighbor

gene id symbol gene type direction distance location
AMCG00005709 NA coding upstream 140 8201620 ~ 8216650 (+)
AMCG00005731 NA coding upstream 114883 8101296 ~ 8101907 (+)
AMCG00005732 NA coding upstream 116612 8099795 ~ 8100178 (+)
AMCG00005730 NA coding upstream 124322 8058166 ~ 8092468 (+)
AMCG00005700 NA coding upstream 195162 8003546 ~ 8021628 (+)
AMCG00005707 NA coding downstream 17118 8247708 ~ 8275344 (+)
AMCG00005705 LOC108424102,LOC106612835,LOC101169222 coding downstream 96471 8327061 ~ 8341359 (+)
AMCG00005721 vps53 coding downstream 277455 8508045 ~ 8523947 (+)
AMCG00005719 NA coding downstream 320515 8551105 ~ 8558820 (+)
AMCG00005736 NA coding downstream 369170 8599760 ~ 8602730 (+)
G153747 NA non-coding upstream 329010 7887566 ~ 7887780 (+)
G153702 NA non-coding upstream 855473 7360384 ~ 7361317 (+)
G153689 NA non-coding upstream 918278 7298154 ~ 7298512 (+)
G153687 NA non-coding upstream 919409 7297134 ~ 7297381 (+)
G153626 NA non-coding upstream 1058915 7102205 ~ 7157875 (+)
G153816 NA non-coding downstream 20711 8251301 ~ 8278074 (+)
G153859 NA non-coding downstream 115088 8345678 ~ 8351749 (+)
G153955 NA non-coding downstream 499213 8729803 ~ 8730155 (+)
G154025 NA non-coding downstream 551399 8781989 ~ 8805304 (+)
G154030 NA non-coding downstream 563237 8793827 ~ 8796424 (+)
AMCG00005660 LOC106603524 other upstream 428919 7749183 ~ 7787871 (+)
AMCG00005694 NA other upstream 882219 7307058 ~ 7334571 (+)
G153675 NA other upstream 950819 7260677 ~ 7265971 (+)
AMCG00005663 NA other upstream 1554310 6608643 ~ 6662480 (+)
AMCG00005667 NA other upstream 1728008 6487718 ~ 6488782 (+)
AMCG00005720 NA other downstream 267912 8498502 ~ 8507097 (+)
AMCG00005787 NA other downstream 597988 8828578 ~ 8854100 (+)
G154251 NA other downstream 1205310 9435900 ~ 9438269 (+)
G154283 NA other downstream 1357212 9587802 ~ 9589798 (+)
G154330 NA other downstream 1650792 9881382 ~ 9883955 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) LOC110507708 LOC106612831 misc NC_048591.1 CM023245.2 19726194 ~ 19844340 (-)