AMCG00005705 (LOC108424102,LOC106612835,LOC101169222)


Basic Information

Item Value
gene id AMCG00005705
gene name LOC108424102,LOC106612835,LOC101169222
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 8327061 ~ 8341359 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005705
ATGGTGCCATCCACTTCCTATCCTCCGTGTCTCCCCCCGGCACACGTCCCTTCCTGGTTTGAGATGGCAGAACGCACTGTGGCCCCAGTTGCCTCGGAGGATGGTGACGGTGACCATGAGGCTGACTCGCAGTCGGACAACCAGGACTGCCCCCTGGAGAGCCCAGAGTCTGACGGGGACCCAGACACACAGCAGGAGGGGGGACACCGGAAGCATCCCAACACCTTCGCCGAGGTGGGTATGGCTAGGCTCTCATGCTTCATGAAGGACGACACAGAGGACGAGGAGCTTCAGCGCATCATGAACGAGCTCCCGGCCAACGCCAGCCGGCCCTTTCCCAGCCGCGAGCATCCCGGGGATGGGGAGGCGGAGGGCACgcacagcaccccccccaccccagagaCCCCCACTTTCTTGTGCCCCCCCGCCGCGGGCAGGGCGTTCTCAGAAGCGGCCCTAGACTCGGAGCCGAGGCACAGGTTTCATCTGGGAATGCAGGAGTTTAGCCTGCCCACGCCACTCAGCCCATCGCGGCCCAAGAGCCCCTGGGGCCGCTTCGACCCCTATGACTCTGCCGAGGACCAAGATAAAGAATATGTGGGATTTGCCACGCTGCCAAACCAGGTTCACCGTAAATCTGTGAAGAAAGGATTCGACTTCACGCTCATGGTGGCAGGGGAATCCGGTCTAGGGAAATCCACATTGGTGAACAGCCTTTTTCTGACAGACCTTTACAAGGACAGGAAGTTGCTGAATGCTGAGGAGAGGATCACGCAGACCGTGGAGATCACCAAGCACACGGTGGACATTGAGGAGAAGGGGGTGAAGCTGAAGCTCACCATCGTGGACACACCCGGCTTCGGGGACGCCGTCAACAACACCGAGTGCTGGAAGTCAGTGGCAGACTACATCGACCAGCAGTTTGAGCAGTACTTCAGGGACGAGAGCGGCCTGAACCGCAAGAACATCCAGGACAACCGCGTGCACTGCTGCCTATACTTCATATCCCCCTTCGGCCACGGCCTCAGGCCTCTGGATGTAGAGTTCATGAAGGCGCTCCACGAGAAGGTGAACATCGTGCCAGTGTTGGCCAAGGCAGACACCCTCACTCCCTCTGaggtgaagaaaaagaaaatgaagATTCGGGAGGAGATAGAGCAGTACGGCATCAAAATCTACCAGTTCCCCGACTGCGACTCAGACGAGGACGAAGACTTCAAACAGCAAGACCAGGAGCTGAAGGACAGCATTCCCTTCGCCGTCATCGGCAGCAACACAGTAGTGGAAGCCAAGGGAAAGCGGGTTCGAGGACGGCTGTACCCCTGGGGCATCGTCGAAGtggAAAACTCGTCGCACTGCGACTTCGTGAAGCTGCGCAACATGCTCGTACGCACGCACATGCAGGACCTGAAGGATGTGACGCGGGAGACGCACTACGAGAACTACCGCGCGCACTGCATTCAGAGCATGACCCGCATGGTGGTGAAGGAGAGGAACCGCAACAAGCTGACCCGGGAGAGTGGCACGGACTTCCCCATCCCCCCGGCGCCGGGGGTGAACGACAGCGAGACCGAGAAGCTGATCCGGGAGAAAGACGAGGAGCTGCGGCGGATGCAGGAAATGCTACAGAAGATCCAGGAACAGATGCACGGCCAAAAAGAGGGATCTTAACCCCCTCCCCCGGCACCGCCTGTACAAAATCAGTCCAGTCTGACTGTCCTAAAActacccccccaaccccctccccacTTCCATTCATTCTCAGCCCCAactaggaaaataaaataaaccgaagacaagaacaaacaaaaacgaaacaaaagaaaaacactaagACATAGTAACCCCTTTTCCTAGTTGTCCTTTGTCTGCATTGCCATACTTGTCACCTCTCTGGACAGTAGCGTAGGACCGGGAGACGTCCACGGGGAGGTTTAAGATGTGGCCCGAGGGTGGCGCTCCTGTTTCACcctatttgaaatgtattaaagagCGCCCGCTGCCTGGCCCTGGTTTGTTTAAAAGATGCAGTGTTCCTTATTCTGGTGTCAGGGTTTTATTCCCACCACCTTCTCTTCACTCAAGTTTTCAAACTGAAAGTTTTACACTCTggaaagattttttattttattttaatttttaaaagcccTTATCCCTGTGTATAAATGTAACTGGACATGTTCACAGTAGCCTCGGTTTAGACTTTCCAGTGAATGTATGACACATCTATTGTTatggttattgttattatttacagttcACAGGACCCCTCTGCTGCACACTGGGTTCAGTACTGTTGTGAGTCGGGCTGTGGAGTCCGAGGCCCGGTGCGTCAGAGACCGGCGTCTCTCCCTCAGGTCCAGTGTGCAGTCGGTCGCATTGCAAACAGAAACCAAtcgtatttttattttccaaatgtgtgtttggtttttatGAATGGATAAAGCAGAATTTAagttttttctgtctgtgtaatGGATGGTACTCTCTGTTCGGATTTCTGTAAGACGTTGTCCCCGCACTGTGTGTCAATGACCTCCCCTCATACAAGAACCTGGATGTGTAAAAGTCACGGGTGGATTTCTTAATGACCCTCCATGAGAACAGCTCTGTACTGTCTGTCTGCAACGGTCTGGGGAAGcccttttattttgccattgcAACCCGGCCTCCCCACTCTGGCCCTGTAGGCCCGGCTCTCTGCTAGGTTTCTTCCAAACCAGGCTCTCGATCACCTGACCGAACCTGTAATGAAACCAATTTCCTTTTATCAGACCatttatatagagagagattcCGATATTTCTAGGTTCCCATCAAAACCACACAAGTAACCTGTAACTGCCAACTCTTTAGGAGCCGATAAACACCTGACATGTCTGACCTGTCTCGATGCAGGGAGGGATGAGCGCGATTCTGTTTCTTAAGCGGCCAAGGTCCCAGCTGTAAACACACATGCAGAGGGGGTGGTGCGTAtgcttgtgcgtgtgtgtgggtctACAGGACCAGGGATGAAGTTCAACGAGGGACCCCCTCCAGGCTTGGTAATGGGAGGGGTTTCCTGAACACTTCCAGGCAGTAATAATGTTCTTGGGTTGGTGAAAGAAATCTGAAGTCTTACGGCCCCTCATCTCGTAAGATCATCCCTCCTGCTGCGTGTTTACGGCAGTGTGCTTCACAGCCCAATAAACATGAAGACGTTTGTCAGAACAAGAAACTTGCCTGTGCTTGTCTTTGTTAAGatatccagattttttttttttaattaagacagACCAATTGCCAATCTTTAGGCTGATTCAAAAGGAAACTTCACACCCAAGctgcagaacaaaaacaaaacgtgaCGCACTAACCGTCACTCAAAACACACTAGTACTGGAGTTGCTTCCTCCTCACTATGTTTGTCATGTGAGTTGAGTGGCCGGGTCAGTCATGCTTTATTGTGACCATAGTGCAGAGGGTGCTGATGTTATTAGCACAAGTGGGGGGAATTACCTTGGGTGATTAAGCAGGCatgtgatttcattggcatatCAGGGATCAGAGAAGTTATTATTCATGATGTAacccttttctgtcatttttcgCCAAATAGAAGATTTAACTAGTATGCagaagagttttttttatttttttttgtttttcattctttgtttctttgccCCAAATCCTGGAGTACTTAAATTGAAAATCAACTGAAAATTCAGTTCTGGATATTGTCACAGGTCGTGATCCAGAATGATTGGGTTACGCAAAGAAACACAATGTACCACGTGGACCTGCTTTAAGGGCCACGTCCAGTCTGAGCATTCGATTGTGAGCGTGTCTGTTGGCGGCGATAAGATTCTTAtcatttatcttattttatttttgcatttttaaatgaagaaatactTTCTCTTGTAAAGCCCCAATGTTTTAGTTTAGTATAATTtatcataatttaaattgaaaatagtTGGAGAGTTTTAAATGATGAGCCCAAAGTTTCaaaggttatttttctttttaatgcaatatctcattaaaaaacagagggtgtctgtgtgtggggggggaggtctgtagatttacattaattaaactgagttcaaaatgaaatgtacatttattataaggAATACCTTATTTATAAAGAGGGTTTGGGTAAAGAGAAGGTGGTGTTCgaaattcctttttttaagtttgtttttgtcgATTTTGTGCAGGAAAAAACCACCAGTGGTTTAATTCAagggatttaatttaatgtattaaaacaagaaagaaaaaataaggatTTTATTGGTTTACGTTTAGTTTTGTGGATGAAAGTCAGTGGATTTGGGCGTCATTGTGACATATCTGCTGAAttacatttgttcatttttctgTTTCACTGTTATATTGCAGTTTGTTGAAAGGGAACACTACGTCTTCCTGCACCACCGGAGGTGGGTTTGGGTTGTTTTTCTTAACATTTGTTCtcccattttttgttttttattttgctttccatttttgtcataaatgcatttattaaatatgttcatataataaataactttaTAAATTCATAGaggtcaaaaataaatatttctacttgcaac

Function

NR:

description
PREDICTED: septin-5-like isoform X4

GO: NA

KEGG:

id description
K16943 SEPT4; septin 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005705 True 4592 mRNA 0.48 13 8327061 8341359

Neighbor

gene id symbol gene type direction distance location
AMCG00005707 NA coding upstream 51717 8247708 ~ 8275344 (+)
AMCG00005708 NA coding upstream 96471 8216790 ~ 8230590 (+)
AMCG00005709 NA coding upstream 110411 8201620 ~ 8216650 (+)
AMCG00005731 NA coding upstream 225154 8101296 ~ 8101907 (+)
AMCG00005732 NA coding upstream 226883 8099795 ~ 8100178 (+)
AMCG00005721 vps53 coding downstream 166686 8508045 ~ 8523947 (+)
AMCG00005719 NA coding downstream 209746 8551105 ~ 8558820 (+)
AMCG00005736 NA coding downstream 258401 8599760 ~ 8602730 (+)
AMCG00005737 NA coding downstream 274006 8615365 ~ 8615952 (+)
AMCG00005735 NA coding downstream 320448 8661807 ~ 8667423 (+)
G153816 NA non-coding upstream 48987 8251301 ~ 8278074 (+)
G153747 NA non-coding upstream 439281 7887566 ~ 7887780 (+)
G153702 NA non-coding upstream 965744 7360384 ~ 7361317 (+)
G153689 NA non-coding upstream 1028549 7298154 ~ 7298512 (+)
G153687 NA non-coding upstream 1029680 7297134 ~ 7297381 (+)
G153859 NA non-coding downstream 4319 8345678 ~ 8351749 (+)
G153955 NA non-coding downstream 388444 8729803 ~ 8730155 (+)
G154025 NA non-coding downstream 440630 8781989 ~ 8805304 (+)
G154030 NA non-coding downstream 452468 8793827 ~ 8796424 (+)
G154091 NA non-coding downstream 680591 9021950 ~ 9071747 (+)
G153815 NA other upstream 96471 8213904 ~ 8230590 (+)
AMCG00005660 LOC106603524 other upstream 539190 7749183 ~ 7787871 (+)
AMCG00005694 NA other upstream 992490 7307058 ~ 7334571 (+)
G153675 NA other upstream 1061090 7260677 ~ 7265971 (+)
AMCG00005663 NA other upstream 1664581 6608643 ~ 6662480 (+)
AMCG00005720 NA other downstream 157143 8498502 ~ 8507097 (+)
AMCG00005787 NA other downstream 487219 8828578 ~ 8854100 (+)
G154251 NA other downstream 1094541 9435900 ~ 9438269 (+)
G154283 NA other downstream 1246443 9587802 ~ 9589798 (+)
G154330 NA other downstream 1540023 9881382 ~ 9883955 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_008866 BX640522.1 coding NC_007126.7 CM002899.2 119057 ~ 163586 (-)
grasscarp (Ctenopharyngodon idella) CI01000010_09982626_09991332 SEPT5, SEPT5A, SEPT5.S coding CI01000010 null 9982114 ~ 9991906 (-)