XLOC_008866 (BX640522.1)


Basic Information

Item Value
gene id XLOC_008866
gene name BX640522.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 119057 ~ 163586 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017530
ATGGAGAACAGCAGCCGCTACAGGAGCGCGCTCTTCGGCCACGGTGAGGAGCAGAGACGCGATGATGAGGACCAGGATAAGGAGTATGTGGGATTCGCTACGTTGCCAAACCAGGTTCACCGTAAATCTGTGAAGAAGGGCTTTGACTTCACACTCATGGTGGCAGGAGAGTCAGGTTTAGGGAAGTCCACGCTGGTCAACAGTCTGTTCCTCACAGATCTCTACAAAGACCGCAAGCTGCTGAACGCTGAAGagCGGATCACACAGACGGTGGAGATCACCAAACATACGGTGGACATCGAGGAGAAGGGCGTCAAGCTCAAGCTCACGATCGTGGACACGCCCGGCTTCGGGGACGCCGTCAATAACACAGAATGctgGAAGTCAGTGGCAGACTACATCGACCAGCAGTTTGAGCAGTATTTCAGAGACGAGAGCGGGCTGAACCGGAAGAACATTCAGGATAACCGTGTGCACTGCTGCCTCTACTTCATCTCACCGTTCGGTCACGGtctcaGACCTCTGGATGTGGAGTTCATGAAGGCTCTTCATGAGAAGGTGAACATCGTCCCGGTGCTGGCCAAAGCAGACACACTCACACCGCTAGAGGTCAAGAAGAAGAAGATTaagATTCGAGAGGAGATCGAGCAGTACGGCATCAAGATCTACCAGTTTCCAGACTGTGATTCAGACGAGGACGAGGAGTTCAAGCAGCAGGACCAGGAGCTGAAGGACAGCATCCCTTTCGCTGTGATTGGCAGTAACACTGTAGTAGAAGCCAAAGGCAAGCGGGTTCGAGGACGGCTGTACCCCTGGGGGATCGTGGAGGtggagAACCCGGCGCACTGTGACTTCGTGAAGCTGAGGAATATGCTGGTGCGCACACACATGCAGGACCTGAAGGACGTGACCCGGGAAACACACTACGAGAACTACAGAGCGCACTGCATCCAGAGCATGACCCGCATGGTGGTGAAGGAGCGCAACCGCAATAAGCTGACGCGGGAGAGCGGCACAGATTTCCCCATCCCCACAGCGCCCGGCGTCAGCGACAGCGAGACCGAGAAGCTGATCCGGGAGAAAGATGAGGAGGTACGGCAGCCGCCCCACACCCAGACGCAGGAGCAGGAGTGTGTGACGCAGGAGTGTGTGGACCAGGAGTGTGTGATGCATGACGAGTGTGTGCAGGAGAGTGTACAGGAGGAGTGTGTGATGCAGGAAGAGTGTGTGCAGGAGGCTGAACACTGCGCTGAGCTCTgctaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000105271

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017530 True 1263 mRNA 0.56 11 119057 163586

Neighbor

gene id symbol gene type direction distance location
XLOC_008865 apoa1b coding downstream 10643 102925 ~ 108414 (-)
XLOC_008864 bace1 coding downstream 21852 93131 ~ 97205 (-)
XLOC_008863 NA coding downstream 29818 84837 ~ 89239 (-)
XLOC_008862 NA coding downstream 34842 81571 ~ 84215 (-)
XLOC_008860 cyp2y3 coding downstream 86906 16175 ~ 32151 (-)
XLOC_008867 limk1a coding upstream 4416 168002 ~ 252813 (-)
XLOC_008868 NA coding upstream 91699 255285 ~ 260813 (-)
XLOC_008869 BX640522.2 coding upstream 119145 282731 ~ 290507 (-)
XLOC_008870 FP102887.1 coding upstream 185865 349451 ~ 349567 (-)
XLOC_008871 NA coding upstream 210794 374380 ~ 378187 (-)
XLOC_008873 CABZ01056628.1 non-coding upstream 262109 425695 ~ 425756 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G305605 NA non-coding CI01000092 null 3882689 ~ 3906909 (+)
bowfin (Amia calva) AMCG00005705 LOC108424102,LOC106612835,LOC101169222 coding CM030142.1 CM030142.1 8327061 ~ 8341359 (+)