XLOC_008867 (limk1a)


Basic Information

Item Value
gene id XLOC_008867
gene name limk1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 168002 ~ 252813 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017531
tgtgtgtgttctcccgCTCCGGCGTGTGGATGAGGTTAATGCTGCTCTGCTGCACCTGGAAGGACGAACGCATGGGAGAGGAGgaagctggtGTGGGGTTGCCGGTGTGTTCGGGATGTGGACAGCAGATCTACGATGATCAGTATCTACAGGCGCTCAGCAGCGACTGGCACACGCTCTGCTTCAGgtgCTGTGAGTGTGGATCGTCTCTCTCGCACTGGTACTATGAGAAGGACGGACGGCTCTTCTGTAAGAAGGACTACTGGGCTAAATTCGGGGAGCTGTGCCACGGCTGCTCTGAGCCAATCAGCACCGGCCTCAtcatgGTCGCTGGAGAGCAGAAGTATCACCCAGAGTGCTTCAGCTGTCTGAGCTGTGGAGCGTTCATCGGTGACGGAGACACGTACGCTCTGGTGGAGAGATCCAAACTGTACTGTGGCCACTGTTATTACCGCAGCATCGTGACTCCGGTCAGCCTGCCCGACTCGCCCTGCTCCAGGATTCCTCACACCGTCACACTCGTCTCCATTCCTGCATCCACCGACGGCAAGAGAGGATTCTCCGTGTCCATCGATCAGGCCTCCAGTCCCAACGGATACAGCCCTGAACACAAACGCACCGTCAGAGTCTCACAggtgtACCCAGACTGCATCAGTCCGGATGTCAAGAACTCTATTCATGTTGGCGATCGCATCCTGGAGATCAATGGAACGCCAATCCAGAACGTTCCTCTGGACGAGatcgATCTGCTGATCCAGGAGACCAGTCGTCTGCTGCAGTTGACCATAGAGCACGATCCCCATGATCAGGGCCCGTCTGTGGATCATGTGGATGGGGGTCCGTCACCTTCTGGAGGCCCGAGCCCCATCACACGTCCACCCAGCCAGGATATCAGCAACCTGCGCTCTCGCATCATTACgcgcagCTACAGCATCGACAAGTCCCCAAGCTCCAGCAGTGCTCCGTCTCCTCTGTCTCTGAGGAAGGACATCGGCCGCTCTGAGTCTCTGCGCGGGGTCTCCAACCGCACACACCGCATATTCAGAGCCTCCGACCTGATCCATGGAGAGGTGCTGGGCACAGGCTGCTTCGGACAAGCCATCAAGgTGACGCACAGAGAGACTGGTGAGGTGATGGTGATGAAGGAGCTCATCCGCTTTGATGAGGAGACACAGAGGACTTTCCTCAAagaggtgaAGGTGATGCGCTGTCTGGATCATCCTAATGTGCTGAAGTTCATCGGTGTCCTCTACAAAGACAAGAGGCTGAACTTCATCGCGGAGTACATCAAAGGAGGAACACTGAGAGACATCATCAAgaacatggacagTAATTACCCGTGGGGGCAGAGAGTGAGCTTTGCTAAGGACATCGCCTCTGGGATGGCGTATCTGCACTCCATGAACATCATCCATCGAGACCTGAACTCACACAACTGTCTGGTCAGAGAGaataaGAGTGTGGTGGTGGCAGACTTCGGGCTGTCGCGGCTGATGGTGGAGGACCGCAGTGTGGAGCGCAGGAAAGCAGACCGCAGGAAGAGGTACACGGTGGTGGGAAACCCCTACTGGATGGCCCCGGAGATGATCCACGgGAAGAGCTACGATGAGAAGGTGGACCTCTTCTCCTTCGGCATCATGCTGTGTGAGATCATCGGCCGGGTGAACGCTGACCCGGATTATCTGCCGCGGGCGCTGGACTTTGGGCTGAACACTGCTGTGTTTCTGGAGGAGCACTGTCCTGCTGACTGCCCTGCTGCATTCTTCCCTATAGCGGCGCTCTGCTGCGACCTGGACGCCGAGAAAcggccTGCGTTCACCAAGCTGGAGTCGTGGCTGGAGGACCTGAAGATGCACCTGGAGCTGGGTCTGCATCTGGTGTCGGAGCTGGAGCTGCTCCATCAGGACTTCATGCAGAAACACACCAGCGGCGGCGGGAAAAACAGCCTGCACACACACCCCGAGCAGCCCGagtagaacacacacacacacacacacacacacatgacactGACCGAAGAGACG

Function

symbol description
limk1a Predicted to enable protein serine/threonine kinase activity. Acts upstream of or within response to yeast. Predicted to be active in cytoplasm; neuron projection; and nucleus. Is expressed in several structures, including blood vessel; digestive system; fin; nervous system; and pronephric duct. Orthologous to human LIMK1 (LIM domain kinase 1).

GO:

id name namespace
GO:0051496 positive regulation of stress fiber assembly biological_process
GO:0006468 protein phosphorylation biological_process
GO:0001878 response to yeast biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0016310 phosphorylation biological_process
GO:0043005 neuron projection cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061212-3 Predicted to enable protein serine/threonine kinase activity. Acts upstream of or within response to yeast. Predicted to be active in cytoplasm; neuron projection; and nucleus. Is expressed in several structures, including blood vessel; digestive system; fin; nervous system; and pronephric duct. Orthologous to human LIMK1 (LIM domain kinase 1).

Ensembl:

ensembl_id ENSDARG00000103467

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017531 True 2024 mRNA 0.57 16 168002 252813

Neighbor

gene id symbol gene type direction distance location
XLOC_008866 BX640522.1 coding downstream 4416 119057 ~ 163586 (-)
XLOC_008865 apoa1b coding downstream 59588 102925 ~ 108414 (-)
XLOC_008864 bace1 coding downstream 70797 93131 ~ 97205 (-)
XLOC_008863 NA coding downstream 78763 84837 ~ 89239 (-)
XLOC_008862 NA coding downstream 83787 81571 ~ 84215 (-)
XLOC_008868 NA coding upstream 2472 255285 ~ 260813 (-)
XLOC_008869 BX640522.2 coding upstream 29918 282731 ~ 290507 (-)
XLOC_008870 FP102887.1 coding upstream 96638 349451 ~ 349567 (-)
XLOC_008871 NA coding upstream 121567 374380 ~ 378187 (-)
XLOC_008872 psph coding upstream 160730 413543 ~ 419597 (-)
XLOC_008873 CABZ01056628.1 non-coding upstream 172882 425695 ~ 425756 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000092_03957253_03983692 LIMK1, LIMK1A coding CI01000092 null 3956721 ~ 3983692 (-)
bowfin (Amia calva) AMCG00005707 NA coding CM030142.1 CM030142.1 8247708 ~ 8275344 (+)