XLOC_008863


Basic Information

Item Value
gene id XLOC_008863
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 84837 ~ 89239 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019093
CACACATCTAAAAGTTCTGTTACAACATTTTGGGTGCACAAACATGCCACAAACATGCTGACGCAGCCAGATTAGAGAGTTGCTGTGATGTTATGGTGGTCTTTCACACACTCGTCTACACGGCATCTTCAGCACTGAGTGCATCTGCGGCTCAGTGAGGTGTAAAGTGTAGTAAAGTACCCCAGTCAGTACCACATTACATCAGTCAAAGAATGAGCAGACTGAACCCGATATCACCGCAAcacggaggaggaggaggaggaggaggaggaggaggagaagctttgccttgtttctagtcctAATGTCTGAACACTtataaaccaagaagcatttctGGACAAGTCAAACTGAGCGTTGTGATCAGAATACTGAGTTCAATATGACAATATCAGAGTTTTACAGTGAGCGGTTATCTGCCGGTGCGGTGAGTAAATAACCGTTCATCATGATCAACACCAGAGTATTGTGTATTGTTCTGAGTAAAAGCTAAACACTAAACAACTGGACAGGACAGCGGAGCTTGAGGGAAGCATTACTGGAGAATTTGACAAGAATCAAGACCAAACCATGTGTGAAGGCCATGTGTGCAGTGTTTCACTGCGCGGCTTGAGCATGTCAGCATAGGAAACACATCTACACATGTACACATGTACACATGTACACATCTACACATGTACACATCTACACATCTACACATCTACACATGTACCTGCTGTGAGCTGAACACTCATCTGTATTTAGAGGAGTCTTCATTAATATTACTGTACCATGATCATATTACTGTACatacagaaGAACACTGTGCTTAAGTTTGGGGcaggggctgtgtgtgtgtgtgtgtgtgtgtgcgcttgtatGAACACACTGACGCTGCAGTGCTGGACTGtctgagtctctctctctctctctctctctctctgaatgaGTTGATATCTGAGGGTTTGGTTCATTGTGTCAGacctcacacacactcatcctgCGTGTGTTTCTTTGGATCAAGGCACTGCTcaggacagtgtgtgtgtgtgtgtgttagagctgagaatagcacacagataatgctctgaaactgaccctttcaggctgtGATCCTAACTGTGGTGTTtaggtgactgtcgctttaaatgcaaatgagcttgtgcttcatgcttctgtcagtctatggagACTCCTGTCGCTGCTTcatctcactcagggctgctgtttatgctaatgagatggagagatgggcactagtgggcggggctttcctcctctgatgacacgtacaaggggagaatgtcaatcacagtgtttcagcctcaagtctgattagaacaaacacaatgAGATACAATTGAGcatcagaggctgctggagatagtaacacactgctgacacacacacacacacgcacacgcacaaacatatacacacacacacacacactactaggTTTGTACCCAGTAtgaaagtgatttctgcatatgAGCTgtgctttaaggctgatttatatttgtttgaaatgTTTACATTGAGTACACGCAGTAGATCTGATGTAGCCTTCGAATACTTCTCGTTCATATCTGTCACACACCTCTTAATACATGTAATACGAGAGGTGCATCAAATCCAAGAGGAAAACAGCCAACAATCTGATCCCTATAGGGGCTGTGTTGCTCAGCAGAGTTCAGAGCGCTGGTTTCACTCTCACACTGGACACGGAAAGCACTGCGCTATGAAAAACGGGCATTCAATGGCTTGTGCTGCGCAAGGGTGGTTTATTTCTGCTGTGAACATAATGTGAGAGCAGCCGACCGCATGGACAGGACATTTCTATGTAGTATGCTTGCTCCTGCCGTTAACAATATCgctgtgttgccatagcaacacaGGTAAAATGGCGCCTCTCGACTCCTTCACTGTCTGCAAAATGTGGTTATTTCATGCTTTGAAAGTCTGGTTTAACTGAAGGAGTTACAGTCTCGATCCTTTAAAAAATGACTTCATTAATgaaatattgattatttattagtCTAATTTCAACACGCTGTTTATGAAGACATTGTTTTGTTCTTCACATTAACGTTAGTTTACATTATGAACTCCGAGAGTGACCTGTACAGCAATAATCCACCTCTGAGATTAGGTTTGCTTGGAACTGATGTGGTCGGACGTGTTCTCTGGACGTCTCTCAGCTATGTAGTACCGTTAGGTTGCCGCTGAAGcatgtcatagctcattaccataaagctcattaccataaagctcattaccataaagctCAGTAACGGTCACACGGTCTATGATGTGCTTTTTCCAGATTTGTAGCGCTGGTGGTGAGAACACACGGTTACAGTAGCATCACACACGCTTCCAGGACAAACTCAAAACACCAGCAAGGAGACCCAGTGGAGCAGAGAAACCCCACCGCCTCCTAGTGTTCACTGCAGAACAACACATGCAGAACACAGAAGCAGAAATGCTAACACCAGCATCGGCTACAGCGTGCACTCAACACACCAGTATAAATCAGCCCTCAGTCACACAACTCCACTAAGCCCACTCCAGCCTCTTCAGAGTCTGCATTCCCTTCCATCAGCTCAATCCCTGTGGGAGTTCAGAGCAGTCATCTCCTCCACACGCTGTACAGACTGCCGTATCGTTCATGTCTTAATAAAGAGGGCTGGCCGTGGATCTGGCTAGTGTGTTTGTGCTCCACATGTCGCCTCTCCTCAGGAGCTTATTGGCCAGATTCTGCATGTATAATCAGATGAGGAGAGCGTTCTGATTGGTTATTCAGTAACGAATCAGAGAACAAATACTAAAGTGACGTGCCAAAGTAAACAAGTCGATAAGGAAAGCAAAGTATGCGGCAGTAATGTTGCTGCATTTCTCAAATATTCTCAGACTATACGGATTATTCGATTATCAGACATATGTGCAGGAGTGACTCCCTCTGTGCACTGATGATTACTGTGATGATGGAGCCGAGCGCTGCGTTTCCCTTTGTGGACGAGAAACACACACTGCCCCCTGCTGGTGTGAAAACACACATGCCTCACACAGACGCAGGACACACACTCTCGGTCACCActgtctgtttggtgtgttcatgtGCAACTTTTTGGTCCAGAGATGCGGCCGGCAGCACAGCTGGTGTCCGGGCCCTGAGGCTGAGGGTGAGATGGGTCACACTCCTCCTGGAAACATGTTTCTGGACGTGATATATGGAGCAggagagcagtgtgtgtgtgtgcagggctcAGTGTGGCCCTCAGTGCCAGGCCGCTCTCCTGCTGTGGGGCTCCAGCTCCGGGCTCTGTCTCTCTGGCAGGGGTGTGGAGCAGGACGATGGCTGGGGCTCAGGTTCAGGGTCAAGGTCGGCCCCGAGGCCCGGGAGCTCCAGGCTGTCGGTGGAGTGTGCGCTGAGCAGCCGCTGGTTCTCCAGCTGTGGGCAGAGCACGTACCGGCTGGGTGGGTGCACCTCCACTGTGGCCACCGAGCCCTTCAGGGCCCCCAGAGCACACGGCAGGCCCCCAGTGGCCCCCAGCTCCCCACTGCTCTCCTCCATGTTCACATACAGGATCTCCTCTGGGTCCTGACTCGGCAGATCCTCCAGAACCTTCTCCAGCTCACAGCGCAGCATCTCAAAGCTTGGCCGGTCCTTGGGGCTCAGCAGCCAGCAGGAGAACATGAGGGAGTAtctggagaacacacacacacacacgcacacacacacacacagaccacagaCGTCACACTGGGTGATGGCGCCAGAAGACATGAGCATGTCCAGCAGATCAGCTCTTGTTTTCACTCGGATACCTGTCTGGTCGACACTGGGGTAACCACAGGCCGACAATACTACCCTGATCACAACACTTGACTCTGATCACCTCATTCATGTCTGTGTGTCAGTTGTAAAGGTTGAACCCTCAGCATCTCTGTTCCCTGTGGTGAACCCCGGTGTCAGTGTGGTGTAACTCACATGCTGTCCAGGCAGTCTGGAGGCTGTTTGAGACGGTTGCCCTGCCGCAGGTAATCATAGATCTCGCTGTTCTCCACCCCAGGGTACGGCGTCTGGCCTCGCGTGGCGATTTCCCACATGGTCACTCCGAAAGACCACTGAAACACACAGAGGAGTCAGCAGAACTACAGCACAGAAGAGGAAGACTAAACTACTGCAGACACTATAATCATGACGAGTCTGAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019093 True 4197 lncRNA 0.49 2 84837 89239

Neighbor

gene id symbol gene type direction distance location
XLOC_008862 NA coding downstream 622 81571 ~ 84215 (-)
XLOC_008860 cyp2y3 coding downstream 52686 16175 ~ 32151 (-)
XLOC_008864 bace1 coding upstream 3892 93131 ~ 97205 (-)
XLOC_008865 apoa1b coding upstream 13686 102925 ~ 108414 (-)
XLOC_008866 BX640522.1 coding upstream 29818 119057 ~ 163586 (-)
XLOC_008867 limk1a coding upstream 78763 168002 ~ 252813 (-)
XLOC_008868 NA coding upstream 166046 255285 ~ 260813 (-)
XLOC_008869 BX640522.2 non-coding upstream 193492 282731 ~ 290507 (-)
XLOC_008870 FP102887.1 non-coding upstream 260212 349451 ~ 349567 (-)
XLOC_008871 NA non-coding upstream 285141 374380 ~ 378187 (-)
XLOC_008873 CABZ01056628.1 non-coding upstream 336456 425695 ~ 425756 (-)

Expression


Co-expression Network