XLOC_008872 (psph)


Basic Information

Item Value
gene id XLOC_008872
gene name psph
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 413543 ~ 419597 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017536
ATGCtctccggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgcaggcttTCGATGCTGACCGAGGCTCAGACCCGGGATCTGCTGCGGCGGGCGGACGCGGTGTGCTTTGATGTGGACAGCACCGTGATCCGGGAGGAGGGCATCGACGAGCTCGCCAAATTCTGCGGAGTCGGGGACGCGGTCACGGAGATgacccGTAAGGCGATGGGCGGCTCTATGTCATTTCAGACGGCACTCAGTGAGCGTCTGTCCATCATCGAGTGCTCGAGGGAACAAGTCAGCAAGCTGATCACAGACAACCCTCCTCAGCTGACACCCGGCATCAGGGAGCTGGTCCAGAAGCTGCAGCAGCGCGGTGTGCAGGTGTTCCTGGTGTCGGGGGGTTTCCGCTGTATCGTGGAGCACGTGGCGTCGCAGCTCTCCATCCCGCTGCAGCACGTCTACGCCAACAGGCTCAAGTTCTACTTCAATGgagagTACGCCGGCTTCGATGAGTCCCAGCCCACGGCTCAGAGCGGAGGGAAGGGCCGAGTGATCAGCATGCTGAAGGAGAAGCACGGCTTCCAGAACATCCTGATGATTGGAGACGGAGCCACAGACCTGGAGGCCTGCCCACCGGCTAGCGCCTTCATCGGGTTCGGAGGGAATGTGCTGCGCCCGCAGGTGAAGGAGAAGAGCTCATGGTACGTCAGCAGCTTCTCTGAGCTCAGTAAAGAACTGGACaagatctgaacacacacacacacacacacacacacacacacacacacacaccgtgccTTTACTAGCCTCAGTAACACACACTTTTAATCCTCACGTGTTTTAGTTTCTCAGGATGCTGTATGTAATAAACGCAGCAGCACACGGAGCTGATTTTAATATGGAGATGTTGTTTATTGATTAACAGATGAGCGGCGTAAtgtagagtgtgtgtgcatgcggccgtctcacacacacacatacagaaaacATCATCAATAATCAGAGCAGAATCATATCAAACACACATCTATGTAGAACACAAGAGAAATCCAATGCAGTAACTGTAAAGCAGACGTCTGCAGCGCGGCTCATCTGACCTCAGATCTGTGTGGTGTACATGTACAGCtaataaatatgcaataaataCAGACTGACGGCTGCCGGCGGTGTTCGAGAGCGCTCCGTCATGTTCTCCTCCTCTAAACCGTGCAGCTGAACTTTATTTGACTGATGAGTGGCTGTGTTTGTCCTGTCTGCAGCGTcagctgtgcgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgttgatccgAATGATCTCGGCAGTGGAGGGTCTGCTGTCTGTCTTCATCTGACGGGGACGCAgcagcgctgtgtgtgtgtgtgt

Function

symbol description
psph Predicted to enable magnesium ion binding activity and phosphoserine phosphatase activity. Predicted to be involved in L-serine biosynthetic process and dephosphorylation. Predicted to act upstream of or within cellular amino acid biosynthetic process. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in PSPH deficiency. Orthologous to human PSPH (phosphoserine phosphatase).

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0006564 L-serine biosynthetic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0016791 phosphatase activity molecular_function
GO:0004647 phosphoserine phosphatase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
ko00680 Methane metabolism
ko00260 Glycine, serine and threonine metabolism
ko01009 Protein phosphatases and associated proteins

ZFIN:

id description
ZDB-GENE-050809-127 Predicted to enable magnesium ion binding activity and phosphoserine phosphatase activity. Predicted to be involved in L-serine biosynthetic process and dephosphorylation. Predicted to act upstream of or within cellular amino acid biosynthetic process. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in PSPH deficiency. Orthologous to human PSPH (phosphoserine phosphatase).

Ensembl:

ensembl_id ENSDARG00000040314

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017536 True 1385 mRNA 0.54 5 413543 419597

Neighbor

gene id symbol gene type direction distance location
XLOC_008871 NA coding downstream 35356 374380 ~ 378187 (-)
XLOC_008870 FP102887.1 coding downstream 63976 349451 ~ 349567 (-)
XLOC_008869 BX640522.2 coding downstream 123036 282731 ~ 290507 (-)
XLOC_008868 NA coding downstream 152730 255285 ~ 260813 (-)
XLOC_008867 limk1a coding downstream 160730 168002 ~ 252813 (-)
XLOC_008873 CABZ01056628.1 coding upstream 6098 425695 ~ 425756 (-)
XLOC_008874 NA coding upstream 8822 428419 ~ 429647 (-)
XLOC_008875 CABZ01056629.1 coding upstream 13438 433035 ~ 436530 (-)
XLOC_008876 CABZ01033206.1 coding upstream 29500 449097 ~ 452347 (-)
XLOC_008877 CABZ01033205.1 coding upstream 34752 454349 ~ 462783 (-)
XLOC_008863 NA non-coding downstream 324304 84837 ~ 89239 (-)
XLOC_008885 NA non-coding upstream 203112 622709 ~ 633408 (-)
XLOC_008893 NA non-coding upstream 393499 813096 ~ 815019 (-)
XLOC_008894 NA non-coding upstream 398594 818191 ~ 848462 (-)

Expression


Co-expression Network