XLOC_008875 (CABZ01056629.1)


Basic Information

Item Value
gene id XLOC_008875
gene name CABZ01056629.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 433035 ~ 436530 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017538
TTAGCTACCGTTTAGATAAAAGAGCTCATCCTCTTGTGCTCACGCTGGTGGTCAGtcagcgctgtgtgtgtgtgtgtgcgcacgcagGAGCCTGATGAGCAGTGTGTGTCCCAGAAGCGTGTGGAGAGACAGGAGCGGGCCAATGAGAGACATCGAGAGGCACTGCGAGAGCTCAACACACGCCGACATgaggagcagcagcagcagcgcaggtcacacacacacacacacacacacacacaaacacacacacacaaacacacactcgctTATGCCTGTACActcctacacacacactcatactcagcCAGTcagcacctacacacacacacatcacacacacacacacacacacacacacacacactccagctttttgagaaatgaggacatcaGCAGCGTCCTCATAATTCACCGTCTTGTAATACGTGTAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNacacacacacacacacacacacgcgctcaggagagagcaacacacacaggtacacacacacacacgcgctcaggagagagcaacacacacaggtacacacacaggtacacacacacacacacgcgctcagGAGAGAGCAACAAACAcaggtacacacacgcacacacgcgcgctcaggagagagcaacacacacacacacacacacacacacacacacacacgctcaggaGAGAGCAGtgcacacaggtacacacacacacgcgctcaggagagagcaacacacacaggtacacacacacacacacgcgctcaggagagagcaacacacacaggtacacacacacacacacgcgcgctcaggagagagcaacacacacacacacacacacacactcaggagaAAGCAACaaacacaggtacacacacacacacacacacgctaaggagagagcaacacacacaggtacacacacacacacgcgctcaggagagagcaacacacacaggtacacacacacgcgctcagGAGAGAGCAACACACACCAGGtacacacacaggtacacacacacacacacacgcgctcaggagagagcaacacacacaggtacacacacacacacacgcgctcagGAGAGAGCAACACactcaggtacacacacacactcaggagaAAGCAACaaacacaggtacacacacacacacacacacgctaaggagagagcaacacacacaggtacacacacacacacacgcgctcaggagagagcaacacacacaggtacacacacacactcaggagaAAGCAACaaacacaggtacacacacacacacacacacgctaaggagagagcaacacacacaggtacacacacacacacgctcaggagagagcaacacacacaggtacacacacacacacgctcaggagaga
>TCONS_00019095
GTCGGACTGAAGTgcaaattttaaacaataaataaataactgttaaaTAATTTAGGGCGCTGATTTCCGCGGGAGGTTTAAATGCCGGAAGTGACGCAGCAGCGGCCGTTAAAGTTTGTTGACATGAGGCCGGAGGAGAGACAGAGgatcggtgtgtgtgtgttcggtcGGTTCTCCCGGTAATAAAGGAATTATGAGAGTATTAAGCAGAAACAGCGCGTTTATGAGCTGATCTCTCTGAAATGAGGAGAAAGGAGAGCCGCGTGAAGCTCAGCCCGAATGAGGAGGAGCAGCTGCTGAGAGAAGAGCTGGACAGACGGAGGAAACTGCGCTTAcagcaggtgcgAGAGCAGGAGCGCTTCATTGCTGCACAGGTGCGCAGGCAGGTGCAGGAGCGCAGACAGAAGCAGCTGCAGACCCTGGCGGACTCCCTGCAGCAGCACTGGCAGCAGCAGCACACACACCGCCTGCAGGCCCTACACACACACTACCAGCGGAGCCTGAGCGCCGTCGGGGAGGGCCACCGCAGCGCTACACACAACCGTGTGGAGAGACAGGAGCGGGCCAATGAGAGACATCGAGAGGCACTGCGAGAGCTCAACACACGCCGACATgaggagcagcagcagcagcgcaggtcacacacacacacacacacacacacacaaacacacacacacaaacacacactcgctTATGCCTGTACActcctacacacacactcatactcagcCAGTcagcacctacacacacacacatcacacacacacacacacacacacacacacacactccagctttttgagaaatgaggacatcaGCAGCGTCCTCAT
>TCONS_00019096
GCCTGTTCTCGCATGAGGAAATGGCAAGGAAAGTGAGCCTTTTATGCTATATTATGTAATCGTTGTTAGTATGAAATGCGCGTTTATGTCGGACTGAAGTgcaaattttaaacaataaataaataactgttaaaTAATTTAGGGCGCTGATTTCCGCGGGAGGTTTAAATGCCGGAAGTGACGCAGCAGCGGCCGTTAAAGTTTGTTGACATGAGGCCGGAGGAGAGACAGAGgatcggtgtgtgtgtgttcggtcGGTTCTCCCGGTAATAAAGGAATTATGAGAGTATTAAGCAGAAACAGCGCGTTTATGAGCTGATCTCTCTGAAATGAGGAGAAAGGAGAGCCGCGTGAAGCTCAGCCCGAATGAGGAGGAGCAGCTGCTGAGAGAAGAGCTGGACAGACGGAGGAAACTGCGCTTAcagcaggtgcgAGAGCAGGAGCGCTTCATTGCTGCACAGGTGCGCAGGCAGGTGCAGGAGCGCAGACAGAAGCAGCTGCAGACCCTGGCGGACTCCCTGCAGCAGCACTGGCAGCAGCAGCACACACACCGCCTGCAGGCCCTACACACACACTACCAGCGGAGCCTGAGCGCCGTCGGGGAGGGCCACCGCAGCGCTACACACAACtcagcg
>TCONS_00019097
GCCTGTTCTCGCATGAGGAAATGGCAAGGAAAGTGAGCCTTTTATGCTATATTATGTAATCGTTGTTAGTATGAAATGCGCGTTTATGTCGGACTGAAGTgcaaattttaaacaataaataaataactgttaaaTAATTTAGGGCGCTGATTTCCGCGGGAGGTTTAAATGCCGGAAGTGACGCAGCAGCGGCCGTTAAAGTTTGTTGACATGAGGCCGGAGGAGAGACAGAGgatcggtgtgtgtgtgttcggtcGGTTCTCCCGGTAATAAAGGAATTATGAGAGTATTAAGCAGAAACAGCGCGTTTATGAGCTGATCTCTCTGAAATGAGGAGAAAGGAGAGCCGCGTGAAGCTCAGCCCGAATGAGGAGGAGCAGCTGCTGAGAGAAGAGCTGGACAGACGGAGGAAACTGCGCTTAcagcaggtgcgAGAGCAGGAGCGCTTCATTGCTGCACAGGTGCGCAGGCAGGTGCAGGAGCGCAGACAGAAGCAGCTGCAGACCCTGGCGGACTCCCTGCAGCAGCACTGGCAGCAGCAGCACACACACCGCCTGCAGGCCCTACACACACACTACCAGCGGAGCCTGAGCGCCGTCGGGGAGGGCCACCGCAGCGCTACACACAACATTAGCTACCGTTTAGATAAAAGAGCTCATCCTCTTGTGCTCA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000088160

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017538 False 1469 mRNA 0.50 1 433035 434503
TCONS_00019095 False 833 lncRNA 0.54 3 434096 436443
TCONS_00019096 False 635 lncRNA 0.53 3 434443 436530
TCONS_00019097 True 672 lncRNA 0.52 3 434462 436530

Neighbor

gene id symbol gene type direction distance location
XLOC_008874 NA coding downstream 3388 428419 ~ 429647 (-)
XLOC_008873 CABZ01056628.1 coding downstream 7279 425695 ~ 425756 (-)
XLOC_008872 psph coding downstream 13438 413543 ~ 419597 (-)
XLOC_008871 NA coding downstream 54848 374380 ~ 378187 (-)
XLOC_008870 FP102887.1 coding downstream 83468 349451 ~ 349567 (-)
XLOC_008876 CABZ01033206.1 coding upstream 12567 449097 ~ 452347 (-)
XLOC_008877 CABZ01033205.1 coding upstream 17819 454349 ~ 462783 (-)
XLOC_008878 mfrp coding upstream 27699 464229 ~ 477223 (-)
XLOC_008879 nudt8 coding upstream 63318 499848 ~ 506010 (-)
XLOC_008880 tagln coding upstream 107214 543744 ~ 551181 (-)
XLOC_008869 BX640522.2 non-coding downstream 142528 282731 ~ 290507 (-)
XLOC_008885 NA non-coding upstream 186179 622709 ~ 633408 (-)
XLOC_008893 NA non-coding upstream 376566 813096 ~ 815019 (-)
XLOC_008894 NA non-coding upstream 381661 818191 ~ 848462 (-)
XLOC_008895 NA non-coding upstream 400485 837015 ~ 848792 (-)
XLOC_008896 NA non-coding upstream 433431 869961 ~ 909037 (-)

Expression


Co-expression Network