XLOC_008878 (mfrp)


Basic Information

Item Value
gene id XLOC_008878
gene name mfrp
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 464229 ~ 477223 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017541
tgtgtgtgtgtgtatgtgagagagagaaagagagagagaaagactgggaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaagaacaGGATTATTACGGAGCTCAATCCCCTCATCTGACTCAGCTTTGAGAGTGTTTGGTGAAAGTGTTTCTGtgggctgaacacacacacacacacacacacacacttcaacaaCACGAGATGTTGGAGCGCAACACTACAGCATGAAAGCAACACAAGAGTGTGTTTCTAAGGGGAATCACACGCTCCTGaagctgttcacacacacacacactggctggACTGAAGAACAGCTTCTTGATGTATTATTGTCATGTACATGCATCTGTTTGACGGATCCGTTAACGTTTCCTTCCTCGTGGTGAGCAGATGGACTGAATTCATAACCTGCCTCATGGTTTCCGTCAGCTGAACATTTGCTGAGGCTTTCTCCAAACGCAGAGACGATGGACGGCGAGGATTCAGCCGAGAGTCAAAGTGCATATGAGAATGTTTTCTGCAATCCAGCTTTTGAACCCGATGAAGACAATGAGGAAAACACAAGAAGCGCTCAAATCCACATATACTTCGAGCCCGCTAAAGAGCCAGCTGCAGTAAATGTGCTGACAGTACGAGCGTGTTTGGCTGATCACAGAGCAGTGTTGGTGTCGGCCGCTGTGCTGTTCGTCTCCACCGTCCTGTGCATCACCCTCATCTTTCTTCTCAAACaaGTTGAGACGACTAAAGAAGAGGTTTCACCTTCAGACACTTGGTTTGGAAACAGAGTTTCTGAAAATCTCTCTTTGAGTCCGACTGCCCTCCAGCCTACATATAGCCCCACAGTCTCTGTGTCTGGGACAGAGCCTACATTCACAAAATGTGGGGGCATGTTGAGCGGTGCAGGAGGGACTCTGAGCTCTCCCAATCACCCAGGTGTGTATCCTCCTGACTCTCACTGTGTGTGGGTGATCCGGGTGTCTCCTCCGTCCCTCGTGCAGATCCAGGTCTCGTCTCTGGCTATCGAGGGACCTTCGCCCTGCCTGTTTGATTGGCTGGAGGTCAGAGAGGAGACAGAGAAGACATCTGCTGCCACCAGATTTTGTGGAAACGTTGCACCACCTACACTGAACACAAACAGCAGTACTGTGCTGGTTTCATTTCACTCGGATGGAAGCATTGGTGGCACTGGGTTTATTGCACAGTACCATTCTATATTACCAGGACAGAGAAGTTGTTCCAGGGAAGAGTTTATGTGTGACAGTGGTCATTGCTTACTGCCAGTTTTCATCTGTGATGGTCAACCAAACTGCCAGGACCATTCAGATGAGCTCAACTGCAGCCACAAGCACAGAGTGTGTGGAGGACAAATAACAGGAGAATACGGATCACTGTCCAGTCCAAACCACCCGAAGCCTTACCCACATCAACAGATGTGTACGTGGCAAATATCAGTGGAGGACGGACAAGTTATTCGACTAAGTTTCCAGAATTTCAGTCTGGAAGCGCAGGATGTCTGCAAGTTTGACTATGTGGAGGTTTATGACGGTGCTGAGACAGCTCTGGGGAGGTACTGTGGGTCAGCGCTGCCTCCTGATCTGACCTCCTCTGGACCTGTGCTGACTGTTGTGTTTGTGGCAGATGAAGGTGTTGCCGACAGTGGCTTTTATGCATCGTTTCAGGCCATATCTCTTTCAGAGAGAACGTGCAGTCCAGCACAGTTTGCCTGTCCCACTGGCGAGTGTCTCCATCAGGACTGGTTGTGTGATGGATGGAGTGACTGTGCCGATGGTGCAGATGAGCACCACTGCATGAACTCCACCTACCCTCCATTCACTTCATCTTGTGAGCTGATCCAGGTTGAAATGTGCAGAGATCTGAGCTACAATCTGACATCTTTTCCGAACATCTGGCTGTCTCTGTCGGATCAGAGAGAGGCGGCCTCTATTCTGCACAAGTACAGGGTGCTGGTGGATCTGCCGTGTTTCGAGTCCTTTCGGCAGCTGGTCTGTGGGATGTTTCTGCCCCGCTGTAGTCCTCAGAGCGGCGTCCTGCAGTTGTGTCAGTCTGTCTGCTCCACCGCCGAGCTGCAGTGCAGTCCCGCTCTCAGCCTGTTCAGCTTAAACTGGCCCTTCAACTGCCTCCTCCTGCCTGATTCACACGACCCCATGGAGTGCTCCCTTCCGTAGGACcagtgatggatggatgcacCACAACCTCAGAGTCAAGCTGGAAAATGACGACACTCACTCACACAGCACTGAAAAGCCAAGTGGAAGGAGTGTCCATTTGTTGGGAAAAAGGACATGCAATATATACATGTTGCCAAAGGTTTTGAGActgttacctttacatgcatatgAACCTCCCTATCTTAATAGGAGGGAT

Function

symbol description
mfrp Acts upstream of or within eye development. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Is expressed in ciliated epithelial cell and retinal pigmented epithelium. Used to study hyperopia and microphthalmia. Human ortholog(s) of this gene implicated in isolated microphthalmia 5; late-onset retinal degeneration; microphthalmia; nanophthalmos; and retinitis pigmentosa. Orthologous to several human genes including C1QTNF5 (C1q and TNF related 5).

GO:

id name namespace
GO:0001654 eye development biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-160728-150 Acts upstream of or within eye development. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Is expressed in ciliated epithelial cell and retinal pigmented epithelium. Used to study hyperopia and microphthalmia. Human ortholog(s) of this gene implicated in isolated microphthalmia 5; late-onset retinal degeneration; microphthalmia; nanophthalmos; and retinitis pigmentosa. Orthologous to several human genes including C1QTNF5 (C1q and TNF related 5).

Ensembl:

ensembl_id ENSDARG00000087814

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017541 True 2389 mRNA 0.50 13 464229 477223

Neighbor

gene id symbol gene type direction distance location
XLOC_008877 CABZ01033205.1 coding downstream 1446 454349 ~ 462783 (-)
XLOC_008876 CABZ01033206.1 coding downstream 11882 449097 ~ 452347 (-)
XLOC_008875 CABZ01056629.1 coding downstream 27699 433035 ~ 436530 (-)
XLOC_008874 NA coding downstream 34582 428419 ~ 429647 (-)
XLOC_008873 CABZ01056628.1 coding downstream 38473 425695 ~ 425756 (-)
XLOC_008879 nudt8 coding upstream 22625 499848 ~ 506010 (-)
XLOC_008880 tagln coding upstream 66521 543744 ~ 551181 (-)
XLOC_008881 cbln18 coding upstream 79733 556956 ~ 568645 (-)
XLOC_008882 cbln20 coding upstream 94972 572195 ~ 576135 (-)
XLOC_008883 si:ch73-144d13.5 coding upstream 109382 586605 ~ 604353 (-)
XLOC_008871 NA non-coding downstream 86042 374380 ~ 378187 (-)
XLOC_008870 FP102887.1 non-coding downstream 114662 349451 ~ 349567 (-)
XLOC_008869 BX640522.2 non-coding downstream 173722 282731 ~ 290507 (-)
XLOC_008885 NA non-coding upstream 145486 622709 ~ 633408 (-)
XLOC_008893 NA non-coding upstream 335873 813096 ~ 815019 (-)
XLOC_008894 NA non-coding upstream 340968 818191 ~ 848462 (-)
XLOC_008895 NA non-coding upstream 359792 837015 ~ 848792 (-)
XLOC_008896 NA non-coding upstream 392738 869961 ~ 909037 (-)

Expression


Co-expression Network