RNA id: TCONS_00019097


Basic Information

Item Value
RNA id TCONS_00019097
length 672
lncRNA type sense_over
GC content 0.52
exon number 3
gene id XLOC_008875
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 433035 ~ 436530 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCTGTTCTCGCATGAGGAAATGGCAAGGAAAGTGAGCCTTTTATGCTATATTATGTAATCGTTGTTAGTATGAAATGCGCGTTTATGTCGGACTGAAGTgcaaattttaaacaataaataaataactgttaaaTAATTTAGGGCGCTGATTTCCGCGGGAGGTTTAAATGCCGGAAGTGACGCAGCAGCGGCCGTTAAAGTTTGTTGACATGAGGCCGGAGGAGAGACAGAGgatcggtgtgtgtgtgttcggtcGGTTCTCCCGGTAATAAAGGAATTATGAGAGTATTAAGCAGAAACAGCGCGTTTATGAGCTGATCTCTCTGAAATGAGGAGAAAGGAGAGCCGCGTGAAGCTCAGCCCGAATGAGGAGGAGCAGCTGCTGAGAGAAGAGCTGGACAGACGGAGGAAACTGCGCTTAcagcaggtgcgAGAGCAGGAGCGCTTCATTGCTGCACAGGTGCGCAGGCAGGTGCAGGAGCGCAGACAGAAGCAGCTGCAGACCCTGGCGGACTCCCTGCAGCAGCACTGGCAGCAGCAGCACACACACCGCCTGCAGGCCCTACACACACACTACCAGCGGAGCCTGAGCGCCGTCGGGGAGGGCCACCGCAGCGCTACACACAACATTAGCTACCGTTTAGATAAAAGAGCTCATCCTCTTGTGCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018808 lncRNA downstream 4815 428419 ~ 429647 (-) True XLOC_008874
TCONS_00019094 lncRNA downstream 56275 374380 ~ 378187 (-) True XLOC_008871
TCONS_00018807 lncRNA downstream 56496 374380 ~ 377966 (-) False XLOC_008871
TCONS_00017534 lncRNA downstream 143955 282731 ~ 290507 (-) True XLOC_008869
TCONS_00017532 lncRNA downstream 144885 282731 ~ 289577 (-) False XLOC_008869
TCONS_00017552 lncRNA upstream 156064 592594 ~ 595263 (-) False XLOC_008883
TCONS_00017553 lncRNA upstream 164317 600847 ~ 601359 (-) True XLOC_008883
TCONS_00019098 lncRNA upstream 186179 622709 ~ 633408 (-) True XLOC_008885
TCONS_00019099 lncRNA upstream 288886 725416 ~ 727742 (-) False XLOC_008890
TCONS_00019100 lncRNA upstream 376566 813096 ~ 815019 (-) True XLOC_008893
TCONS_00017536 mRNA downstream 14865 413543 ~ 419597 (-) True XLOC_008872
TCONS_00017531 mRNA downstream 181649 168002 ~ 252813 (-) True XLOC_008867
TCONS_00017530 mRNA downstream 270876 119057 ~ 163586 (-) True XLOC_008866
TCONS_00017529 mRNA downstream 326048 105955 ~ 108414 (-) True XLOC_008865
TCONS_00017528 mRNA downstream 327773 105955 ~ 106689 (-) False XLOC_008865
TCONS_00017539 mRNA upstream 12567 449097 ~ 452347 (-) True XLOC_008876
TCONS_00017540 mRNA upstream 17819 454349 ~ 462783 (-) True XLOC_008877
TCONS_00017541 mRNA upstream 27699 464229 ~ 477223 (-) True XLOC_008878
TCONS_00017542 mRNA upstream 63318 499848 ~ 506010 (-) True XLOC_008879
TCONS_00017543 mRNA upstream 107214 543744 ~ 551177 (-) False XLOC_008880
TCONS_00017537 other downstream 8706 425695 ~ 425756 (-) True XLOC_008873
TCONS_00017535 other downstream 84895 349451 ~ 349567 (-) True XLOC_008870
TCONS_00017597 other upstream 885260 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017627 other upstream 1398441 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017639 other upstream 1829439 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017647 other upstream 2188498 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017655 other upstream 2299853 2736383 ~ 2736498 (-) True XLOC_008940

Expression Profile

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