RNA id: TCONS_00018807


Basic Information

Item Value
RNA id TCONS_00018807
length 2830
lncRNA type inter_gene
GC content 0.34
exon number 4
gene id XLOC_008871
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 374380 ~ 378187 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCACGAGGTGTCCTCTCACCAGCAGCAGCTGCCATCTCCTGATTCAGGTTTGGAATGCAGTGTAAGTTTTGCAAATTTGTAAACAGTAGCTGAGAAGTTACACTACACACTACATCGCTATCAAGGAGCATCCTGGCAGCAGCCTTGTTTGTTCACTGACTGCTTCTGCACTTTAAAGACTCTGATGTCTGAAAACAGTGGCTTGCATGTTTTTGGGAGTTTAGGTCTATGCTGAGTTTTACAGGATTACTCAAACCAACCTCAAAGATACCTTCTCTTTTTCGGATGAATACGCTATCAAGTTTTATGGATCATGTGGTGGGCGATATGGAGAGATAATAAGGACCGCCCTGGACCAACTGGACAATCAAGTAATTATTTAGCATTCAATCATATCACTGATTAAAGGGGGCATATTAAACTTTATGGAGTTTACCATGGAGTTTCTCTTTTTGTGTGCAATATTGGAATTCATGCAGGTAATTAATCTTTGAAGTTACAAAACAGTTTGTTCCCTAAAAGAAAAGTTTGTAGCACTGTTTTCACCTCTGTAAAGGATGCTACATTTTCATCACTTAGTCTTTAGTAGAACAACCATGACTGAGTCCGGCTGACCAGGGAGTGAAAACAGGTGCtgcaacaataattataaagcaaatttcatttttaataattaaaacatgttgGGAATTTCTGATCAAAATGACTAACCTGTGAATAACCATAATTAATGCCCTTCAATTGTAAAGTGGTGCCACCTGTCATCTCTCAGGGTCTGAGCATCTGGTTTAATGTGACAATAGCTGATGACCTATGGCAAGCCGTGTTAACTTTTATTCTATAGCctgtactagtatctattttcttgttactagtacttatattttagatactagtatcttttccattaagtactagtacttatttattagatactagtacttatttattagatactagtacttattaaatagatactagttcttatttattagttactagtacttatttattagttactagtacttatttattagttactagtacttatttattagatactagtacttatttattagatactagtacttatttattagatactagttcttatttattagttactagtacttatttattagatactagttcttatttattagttactagtacttatttattagatactagttcttatttattagttactagtacttatttattagttactagtacattaaatagatactagttcttatttattagttactagtacttattttaatagtgactagtaactattctgttgttactcgtaatgaattaaaaattttccCATTCATTTCTATGGGATCTCTAATTGAGATATcaactattcagttttgactagtatgtaTTCCAGCTGTGACTAGTGCATATTTTTATCTACTAGTAGTTAATCATTAGGTACTAGTACCTATTACTGAGATGCTACTACCTaattaatagatactagtacttatttattagatactagtacttattaaatagcttactaatgtttattcatgtagagttgatgcttaacggataatcaattcactatttgctaatgcttaataaatgattcattattataaaagtgttacctgaaatgttttataaatagaaGGTATATAAATGACTGTGTTACTGACATTACTACCTTCAGTTTCCAAATTAAGTtgctttgcctttgctttttttcagtaaaaatagtttttcatcctctttttatgtttctttttactGCAGGACACAGAGCCAGAAGATATTTGCAGAAAAGAGATGGAGATGGACATCCTTAGCACTGTTGAAGATGATGTTGCCACTCTTCAGACCAACCTAAATGTAAGGTGCCTGTCTGTGGTTCTGGAAGAGCAAATCGTGCTGGAAAAGATCTTCCGACAGCTGTTGTTCTCCTCTTTGGTTTGATTAATTTCCTCATTATGAACTACCCCAAAGAACTGAAACACATCTTTGAAACTATTCAGAAAGTGTTTATTGGCCTTGATCCTCAGTGCTCAGCAAGAGTCCagtctttcaaaaacaaaatgcattggTTTGTACACTGAAATTGTGTTACTCTTGGTGTTGTCACGAAActtaaattcagttttgattttacattttcaaattttaaaaacatccgtTTCCCACCAATTGATTGATTGGCTGTTGTGTTCAAGCgctcaacataaatgactgtgattggctgagaagtTCACCATTTCACTGCTCTTCACTGATGTTCatggagtgcaaacacagatacacacacacacacacacacacacacacaaactggagTGTTTCAAAACGTCACATAGTCGATCCATCAGCGTAACACTTGTGTCAGCTTATACACAGAGCAGTTGATCAATGTGAAATTCTTAAGTGTCCCTgtgtctgtggttacactcagtaaacagcagtgagtttggtgaactgatgatcttcacGCCCAATCAGtgttttctgttgagcatgtgaacacaatggcaatatAACAGTGTTTAAAACATGGTCAAcaacgctcaaatgttagcaggaaatggacgtttttaaaattataGAACTGATGGGTAACAACATTAAAATATCGTGACAAAACTAATTACTCTTgcactttgaaaaaaatgttgatagtgcaagctttttaaatatttcttttgcTTAACTCGAGCACTTAAAAGGCAATACAGGATTTGAGGATTTACCTTTTTGTTGCCTCTTTTCCTTCTCTGGACTGCAGTACATTTCATTTGGACAGAAAGCTGTTTGCAGAATTGTCAATAAATAGATTCTTTGA

Function

GO:

id name namespace
GO:0070482 response to oxygen levels biological_process
GO:0036293 response to decreased oxygen levels biological_process
GO:0009259 ribonucleotide metabolic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0034220 ion transmembrane transport biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0009060 aerobic respiration biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0043062 extracellular structure organization biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0098655 cation transmembrane transport biological_process
GO:0098660 inorganic ion transmembrane transport biological_process
GO:0098662 inorganic cation transmembrane transport biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0017144 drug metabolic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0055085 transmembrane transport biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0019637 organophosphate metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0044281 small molecule metabolic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0090407 organophosphate biosynthetic process biological_process
GO:1901135 carbohydrate derivative metabolic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0030574 collagen catabolic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0015985 energy coupled proton transport, down electrochemical gradient biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:1990542 mitochondrial transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0006839 mitochondrial transport biological_process
GO:0001666 response to hypoxia biological_process
GO:0098803 respiratory chain complex cellular_component
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0005747 mitochondrial respiratory chain complex I cellular_component
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0030964 NADH dehydrogenase complex cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:1990204 oxidoreductase complex cellular_component
GO:0031090 organelle membrane cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0045271 respiratory chain complex I cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0070469 respirasome cellular_component
GO:0098796 membrane protein complex cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0005739 mitochondrion cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0009055 electron transfer activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00017534 lncRNA downstream 83873 282731 ~ 290507 (-) True XLOC_008869
TCONS_00017533 lncRNA downstream 84803 282731 ~ 289577 (-) False XLOC_008869
TCONS_00017532 lncRNA downstream 84803 282731 ~ 289577 (-) False XLOC_008869
TCONS_00018806 lncRNA downstream 113567 255285 ~ 260813 (-) True XLOC_008868
TCONS_00019093 lncRNA downstream 285141 84837 ~ 89239 (-) True XLOC_008863
TCONS_00018808 lncRNA upstream 50453 428419 ~ 429647 (-) True XLOC_008874
TCONS_00019095 lncRNA upstream 56130 434096 ~ 436443 (-) False XLOC_008875
TCONS_00019096 lncRNA upstream 56477 434443 ~ 436530 (-) False XLOC_008875
TCONS_00019097 lncRNA upstream 56496 434462 ~ 436530 (-) True XLOC_008875
TCONS_00017552 lncRNA upstream 214628 592594 ~ 595263 (-) False XLOC_008883
TCONS_00017531 mRNA downstream 121567 168002 ~ 252813 (-) True XLOC_008867
TCONS_00017530 mRNA downstream 210794 119057 ~ 163586 (-) True XLOC_008866
TCONS_00017529 mRNA downstream 265966 105955 ~ 108414 (-) True XLOC_008865
TCONS_00017527 mRNA downstream 266480 102925 ~ 107900 (-) False XLOC_008865
TCONS_00017536 mRNA upstream 35577 413543 ~ 419597 (-) True XLOC_008872
TCONS_00017538 mRNA upstream 55069 433035 ~ 434503 (-) False XLOC_008875
TCONS_00017539 mRNA upstream 71131 449097 ~ 452347 (-) True XLOC_008876
TCONS_00017540 mRNA upstream 76383 454349 ~ 462783 (-) True XLOC_008877
TCONS_00017541 mRNA upstream 86263 464229 ~ 477223 (-) True XLOC_008878
TCONS_00017535 other downstream 24813 349451 ~ 349567 (-) True XLOC_008870
TCONS_00017537 other upstream 47729 425695 ~ 425756 (-) True XLOC_008873
TCONS_00017597 other upstream 943824 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017627 other upstream 1457005 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017639 other upstream 1888003 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017647 other upstream 2247062 2625028 ~ 2625663 (-) True XLOC_008933

Expression Profile

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