RNA id: TCONS_00018808


Basic Information

Item Value
RNA id TCONS_00018808
length 692
lncRNA type inter_gene
GC content 0.53
exon number 3
gene id XLOC_008874
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 428419 ~ 429647 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tgcatgtgcgtgcttGTACATGTTTGTgtctgtgcgtgcgtgcgtgcgtgcgtgtgtgtgtgtgtgattgctcGGCGCAGGAGGCTGTGCTGCGGCAGCAGGAGGAGCAGCTGGCTctgctggaggagctggaggagcagCGGCGGGAGCTCCAgcagcagctcacacacactctACACACACTGCAGGAGCCTGAACACCAGCAGGAGGAGATCAGCAGCACACATCCTGAACCACCtgcacagGCTGAGTCAGACACATTCAGACTCCATCAGTACCAGCAGAGGCTCCTGCAGCAGAACCGACTGCACAGGCAGTTCATTGCTGAAGCTCAGCGGCGGCTGCAGGAGCACCAGCAGAGTCTGAGGACACACTCCAGCATGAGCAGCGCTGCAGAGACAGAGACAACACAGAAGAGGAAGAGGATCTGTGTGTCTCTGCAGCTCCGAGAGCAGAGTCTGTCTGCATCTGCACACACTCCTGCTGGAGGATCTGCGTCTGCACACACTCCTGCTGGAGGATCTGCGTCTGCACACACAGGTTATTCTACCGCTGCATCTCTACATCCCTCTTTAtttggatgaggagattccccccattgtgtaaagcgctttaagtgtctagaaaagcactGTATAATCATAAGGTgctatgattattaatattatgattattattattataattgttgc

Function

GO:

id name namespace
GO:0010608 posttranscriptional regulation of gene expression biological_process
GO:0016441 posttranscriptional gene silencing biological_process
GO:0016458 gene silencing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0031047 gene silencing by RNA biological_process
GO:0043412 macromolecule modification biological_process
GO:0006464 cellular protein modification process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0040029 regulation of gene expression, epigenetic biological_process
GO:0036211 protein modification process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0035194 post-transcriptional gene silencing by RNA biological_process
GO:0035195 gene silencing by miRNA biological_process
GO:0035770 ribonucleoprotein granule cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0036464 cytoplasmic ribonucleoprotein granule cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0061980 regulatory RNA binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0035198 miRNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019094 lncRNA downstream 50232 374380 ~ 378187 (-) True XLOC_008871
TCONS_00018807 lncRNA downstream 50453 374380 ~ 377966 (-) False XLOC_008871
TCONS_00017534 lncRNA downstream 137912 282731 ~ 290507 (-) True XLOC_008869
TCONS_00017533 lncRNA downstream 138842 282731 ~ 289577 (-) False XLOC_008869
TCONS_00017532 lncRNA downstream 138842 282731 ~ 289577 (-) False XLOC_008869
TCONS_00019095 lncRNA upstream 4449 434096 ~ 436443 (-) False XLOC_008875
TCONS_00019096 lncRNA upstream 4796 434443 ~ 436530 (-) False XLOC_008875
TCONS_00019097 lncRNA upstream 4815 434462 ~ 436530 (-) True XLOC_008875
TCONS_00017552 lncRNA upstream 162947 592594 ~ 595263 (-) False XLOC_008883
TCONS_00017553 lncRNA upstream 171200 600847 ~ 601359 (-) True XLOC_008883
TCONS_00017536 mRNA downstream 8822 413543 ~ 419597 (-) True XLOC_008872
TCONS_00017531 mRNA downstream 175606 168002 ~ 252813 (-) True XLOC_008867
TCONS_00017530 mRNA downstream 264833 119057 ~ 163586 (-) True XLOC_008866
TCONS_00017529 mRNA downstream 320005 105955 ~ 108414 (-) True XLOC_008865
TCONS_00017527 mRNA downstream 320519 102925 ~ 107900 (-) False XLOC_008865
TCONS_00017538 mRNA upstream 3388 433035 ~ 434503 (-) False XLOC_008875
TCONS_00017539 mRNA upstream 19450 449097 ~ 452347 (-) True XLOC_008876
TCONS_00017540 mRNA upstream 24702 454349 ~ 462783 (-) True XLOC_008877
TCONS_00017541 mRNA upstream 34582 464229 ~ 477223 (-) True XLOC_008878
TCONS_00017542 mRNA upstream 70201 499848 ~ 506010 (-) True XLOC_008879
TCONS_00017537 other downstream 2663 425695 ~ 425756 (-) True XLOC_008873
TCONS_00017535 other downstream 78852 349451 ~ 349567 (-) True XLOC_008870
TCONS_00017597 other upstream 892143 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017627 other upstream 1405324 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017639 other upstream 1836322 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017647 other upstream 2195381 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017655 other upstream 2306736 2736383 ~ 2736498 (-) True XLOC_008940

Expression Profile

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