RNA id: TCONS_00017542


Basic Information

Item Value
RNA id TCONS_00017542
length 1633
RNA type mRNA
GC content 0.49
exon number 5
gene id XLOC_008879
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 499848 ~ 506010 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGTCACAACATCCTTCAGACGTCATCGTGCTGATTATGTGTTATTTTAAGgatgTTCAGCACTCCGCATGTGAAGGCCTGTGTGAATCTGCTGTGGGTTCACAGACTGTCTCTCAGAGATGCTCATATTCATCTCCAGAACAGACACTTCTGCTCCAGATCTGCTCTCACTCCTCCTCATAGATGTATTTCTGCAGTGTCAGGATCTTCTGAATACTCCCGGACATGCATTAGCACTCGTTTGCTTTTAGCACGCATGAACTTCAGCTGTGTACACTCAACGAACTCTGTCCTGCTGTTTGCACACCGCAGTTTGACTGCGTCTCCATCAGCGCTCTCCACTATAGTGAGTCCTGAAGGCTGCACGGGGAGACACACACACCGCTGGGGTCTAAATCAGCAGTCGTGTGTTAGCATTAGTGCAGGTCATGTGTGCGCTGAGAGCCGACCCGCAGTGTTTGCGATTCAGAGACGCAGACTGCACAGAAACGCACAGTTTGAGGAGTGTGTGTCTGCGCTGAACGAGGCGCGCTGCAGACGCTCGCTGCAGGCCAACGCTGCGCTGTACGAGCGGGACACACACCGCTGGGCCGCGGTgctggtgtgtctgtgtgtgtcacgTGGAGATCCAGCGCTGCTCTTCACACTCAGATCTGCACAGCTGAAGGGCAGACACAAAGGAGACGTCAGCTTTGCAGGAGGAAAGAAGGACCcgtcagacagaactgttgtggaTACGGCGCTCAGAGAGGCCGCTGAAGAGCTGGGAATCCACATCCCTGAGGAGAAGGTGTGGGGTGTGCTGAAACCCCTGCGGGATAAGTCTGGAATGATGATAGCGCCAGTAATAGCCAACATCGGCCCACTGGAGGCGCTCTCTTTCCAGCCGAACCCCAGTGAGGTGGAGGAGATTTTCACCCTGACTCTGGAGCATTTGTGTGAGCCCCGGAACCGAGGATACACACACTTCCGCACGGGTGAGCGTTACGGGTACACACTGCCTGTGTTTCTCAGCCCGAAGCACCGGGTCTGGGGTCTGACAGCGGTGGCTCTGGATCAGGCTCTGAAACTCATCGTCCCACCAGAGCAGATGCTGGAGCGCAGAGTaatacagcagcagcagcagcgggaCGCTTCATAAACACACAggtcacacacacattcagctgcAGGAATGAAATATGGGTCATATTTGAGCAATAAACAAAAGGGATCAAGCGGTTCTGCTGTCACTGGGGCAGCCACACTGCAAAACAGGCTGTTCTTACTGAGAGTTTCTGTCTGGTTTCaagtccaaacatctaaaaactcttaaattaatAAGCGTTTTCTAGACATATAGTGTTGTTTTCaggaataatgagtcaaaataaagagagattctccttaaaacaagcagaataatctgacaattGTTTTGGATTTGAAATGACACTATTTCTCTTCCGCATTGgtagattattctgcttgttgtAATGTAAAGCTCTAGTTCAGGCTTCACGTCTCTCTCTGTCACATTGGCAAGATTTTGATAATTATGAGTTCTGCACTTTATCCCAttattgtaaaaacattttaaagctgcAGTCTGTAACTTTTATTTGCTTCTCTGAAATAAATGTTTGAGTTCATG

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component
GO:0016787 hydrolase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061013-219 Predicted to enable hydrolase activity. Orthologous to human NUDT8 (nudix hydrolase 8).

Ensembl:

ensembl_id ENSDART00000155472

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019096 lncRNA downstream 63318 434443 ~ 436530 (-) False XLOC_008875
TCONS_00019097 lncRNA downstream 63318 434462 ~ 436530 (-) True XLOC_008875
TCONS_00019095 lncRNA downstream 63405 434096 ~ 436443 (-) False XLOC_008875
TCONS_00018808 lncRNA downstream 70201 428419 ~ 429647 (-) True XLOC_008874
TCONS_00019094 lncRNA downstream 121661 374380 ~ 378187 (-) True XLOC_008871
TCONS_00017552 lncRNA upstream 86584 592594 ~ 595263 (-) False XLOC_008883
TCONS_00017553 lncRNA upstream 94837 600847 ~ 601359 (-) True XLOC_008883
TCONS_00019098 lncRNA upstream 116699 622709 ~ 633408 (-) True XLOC_008885
TCONS_00019099 lncRNA upstream 219406 725416 ~ 727742 (-) False XLOC_008890
TCONS_00019100 lncRNA upstream 307086 813096 ~ 815019 (-) True XLOC_008893
TCONS_00017541 mRNA downstream 22625 464229 ~ 477223 (-) True XLOC_008878
TCONS_00017540 mRNA downstream 37065 454349 ~ 462783 (-) True XLOC_008877
TCONS_00017539 mRNA downstream 47501 449097 ~ 452347 (-) True XLOC_008876
TCONS_00017538 mRNA downstream 65345 433035 ~ 434503 (-) False XLOC_008875
TCONS_00017536 mRNA downstream 80251 413543 ~ 419597 (-) True XLOC_008872
TCONS_00017543 mRNA upstream 37734 543744 ~ 551177 (-) False XLOC_008880
TCONS_00017544 mRNA upstream 37736 543746 ~ 551181 (-) True XLOC_008880
TCONS_00017545 mRNA upstream 50946 556956 ~ 568645 (-) False XLOC_008881
TCONS_00017546 mRNA upstream 51074 557084 ~ 563877 (-) True XLOC_008881
TCONS_00017547 mRNA upstream 66185 572195 ~ 576135 (-) True XLOC_008882
TCONS_00017537 other downstream 74092 425695 ~ 425756 (-) True XLOC_008873
TCONS_00017535 other downstream 150281 349451 ~ 349567 (-) True XLOC_008870
TCONS_00017597 other upstream 815780 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017627 other upstream 1328961 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017639 other upstream 1759959 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017647 other upstream 2119018 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017655 other upstream 2230373 2736383 ~ 2736498 (-) True XLOC_008940

Expression Profile

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