RNA id: TCONS_00017543


Basic Information

Item Value
RNA id TCONS_00017543
length 773
RNA type mRNA
GC content 0.58
exon number 5
gene id XLOC_008880
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 543744 ~ 551181 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAGGGTCCGCCGTGCTGAACATAAAGCTGCTgaatctgaacacacacactcctgctgaCTCCGGGACCGACTGCGGCATCGCTCTCTACTACAGGAGCGACTATGGCAAACAAGGGGCCGTCTTATGGGCTGAGCCGGCAGGTGCAGGATAAGATCGAGCAGAAGTACGACCCGGAGCTGGAGCTGCGTCTGGTGGAGTGGCTCGTGGCCCAGTGTGGGTCAGCGGTGGGGAGACCCGACGCCGGGAAACTGGGCTTTCAAGCCTGGCTTAAAGACGGATGCGTGTTGTGCGAGCTGATCAACAGTCTGAGTAAAGAGAAGCCGGTGAAGAAGATCCAGAGCTCCAGCATGGCCTTTAAGCAGATGGAGCAGGTCTCGCAGTTCCTGAACGCCGCCGAGCAGTACGGCGTGGCCAAAACCGACATATTTCAGACGGTGGATCTGTGGGAGGGAAAAGACCTGGCAGCGGTGCAGAGGACTCTGATGGCTCTGGGCAGCATCGCAGTCACCAAAGAGGACGGAGCTTTCCGTGGAGACCCAAACTGGTTCTTCAAGAAAGCGCAGGAGAACCGCAGGGATTTCTCAGACGATCAGATGAAGGAGGGCAAGAACGTGATCGGGCTGCAGATGGGCTCCAACAGAGGGGCGTCTCAGGCGGGCATGACGGGGTACGGGCGCCCGCGGCAGATCATGAACccctgaacacacactcacatcagcACACCACCACAACCACTGCCTAATAAAGATTCAAAACACTGACGCCCGTCAA

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-070912-1 Predicted to be active in cytoskeleton. Is expressed in several structures, including artery; gut; hematopoietic stem cell; smooth muscle; and swim bladder bud. Orthologous to human TAGLN (transgelin).

Ensembl:

ensembl_id ENSDART00000066774

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019096 lncRNA downstream 107214 434443 ~ 436530 (-) False XLOC_008875
TCONS_00019097 lncRNA downstream 107214 434462 ~ 436530 (-) True XLOC_008875
TCONS_00019095 lncRNA downstream 107301 434096 ~ 436443 (-) False XLOC_008875
TCONS_00018808 lncRNA downstream 114097 428419 ~ 429647 (-) True XLOC_008874
TCONS_00019094 lncRNA downstream 165557 374380 ~ 378187 (-) True XLOC_008871
TCONS_00017552 lncRNA upstream 41417 592594 ~ 595263 (-) False XLOC_008883
TCONS_00017553 lncRNA upstream 49670 600847 ~ 601359 (-) True XLOC_008883
TCONS_00019098 lncRNA upstream 71532 622709 ~ 633408 (-) True XLOC_008885
TCONS_00019099 lncRNA upstream 174239 725416 ~ 727742 (-) False XLOC_008890
TCONS_00019100 lncRNA upstream 261919 813096 ~ 815019 (-) True XLOC_008893
TCONS_00017542 mRNA downstream 37734 499848 ~ 506010 (-) True XLOC_008879
TCONS_00017541 mRNA downstream 66521 464229 ~ 477223 (-) True XLOC_008878
TCONS_00017540 mRNA downstream 80961 454349 ~ 462783 (-) True XLOC_008877
TCONS_00017539 mRNA downstream 91397 449097 ~ 452347 (-) True XLOC_008876
TCONS_00017538 mRNA downstream 109241 433035 ~ 434503 (-) False XLOC_008875
TCONS_00017545 mRNA upstream 5779 556956 ~ 568645 (-) False XLOC_008881
TCONS_00017546 mRNA upstream 5907 557084 ~ 563877 (-) True XLOC_008881
TCONS_00017547 mRNA upstream 21018 572195 ~ 576135 (-) True XLOC_008882
TCONS_00017548 mRNA upstream 35428 586605 ~ 591308 (-) False XLOC_008883
TCONS_00017549 mRNA upstream 35830 587007 ~ 590787 (-) False XLOC_008883
TCONS_00017537 other downstream 117988 425695 ~ 425756 (-) True XLOC_008873
TCONS_00017535 other downstream 194177 349451 ~ 349567 (-) True XLOC_008870
TCONS_00017597 other upstream 770613 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017627 other upstream 1283794 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017639 other upstream 1714792 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017647 other upstream 2073851 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017655 other upstream 2185206 2736383 ~ 2736498 (-) True XLOC_008940

Expression Profile

//