RNA id: TCONS_00017553


Basic Information

Item Value
RNA id TCONS_00017553
length 434
lncRNA type retained_intron
GC content 0.43
exon number 2
gene id XLOC_008883
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 586605 ~ 604353 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ctgtcatcataaaataaaagaaatcagttattagaaatgattagaAAAGGATTacgtttagaaacgtgttgaacatctctccgttaaacagaaatcgaggAAAACAACTATAGTGATGTGACGTCTAACAGAAGTTGTCGTTAAAGGTGATTTCCATTGACGTTCATGTGGAGGAGACTCTTGGAGAGCTTCTGCTGGTCAAACTGGAGAAGGAGAAAACCCTGATCAATGATCAATGGTACTGCAGGAGCATCAGCGTAACAGCACCCACCGGAGACTGCTTCGAGTTCCCCTGTTATCACTGGATAGCGGATCAACAGGAGCTGGCGCTTCCGGAAGGCCGGGGTCGATTGCCTCAGGATGAAAAGCTCTCAATACTGAAACAGTACAGGCACAAGGAACTggaaaacagacaaaaacaattTAGGTACAAT

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-330 Predicted to enable arachidonate 5-lipoxygenase activity. Predicted to be involved in fatty acid metabolic process and lipid oxidation. Predicted to be located in cytoplasm. Predicted to be active in nuclear envelope. Is expressed in EVL and periderm. Human ortholog(s) of this gene implicated in artery disease (multiple); asthma (multiple); pancreatic cancer; and pulmonary tuberculosis. Orthologous to human ALOX5 (arachidonate 5-lipoxygenase).

Ensembl:

ensembl_id ENSDART00000155380

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00017552 lncRNA downstream 5584 592594 ~ 595263 (-) False XLOC_008883
TCONS_00019096 lncRNA downstream 164317 434443 ~ 436530 (-) False XLOC_008875
TCONS_00019097 lncRNA downstream 164317 434462 ~ 436530 (-) True XLOC_008875
TCONS_00019095 lncRNA downstream 164404 434096 ~ 436443 (-) False XLOC_008875
TCONS_00018808 lncRNA downstream 171200 428419 ~ 429647 (-) True XLOC_008874
TCONS_00019098 lncRNA upstream 21350 622709 ~ 633408 (-) True XLOC_008885
TCONS_00019099 lncRNA upstream 124057 725416 ~ 727742 (-) False XLOC_008890
TCONS_00019100 lncRNA upstream 211737 813096 ~ 815019 (-) True XLOC_008893
TCONS_00019101 lncRNA upstream 216832 818191 ~ 848462 (-) True XLOC_008894
TCONS_00019102 lncRNA upstream 235656 837015 ~ 848792 (-) True XLOC_008895
TCONS_00017548 mRNA downstream 9539 586605 ~ 591308 (-) False XLOC_008883
TCONS_00017549 mRNA downstream 10060 587007 ~ 590787 (-) False XLOC_008883
TCONS_00017547 mRNA downstream 24712 572195 ~ 576135 (-) True XLOC_008882
TCONS_00017545 mRNA downstream 32202 556956 ~ 568645 (-) False XLOC_008881
TCONS_00017546 mRNA downstream 36970 557084 ~ 563877 (-) True XLOC_008881
TCONS_00017554 mRNA upstream 9870 611229 ~ 617797 (-) True XLOC_008884
TCONS_00017555 mRNA upstream 46495 647854 ~ 651602 (-) False XLOC_008886
TCONS_00017556 mRNA upstream 48378 649737 ~ 660394 (-) False XLOC_008886
TCONS_00017557 mRNA upstream 54710 656069 ~ 660289 (-) True XLOC_008886
TCONS_00017558 mRNA upstream 63797 665156 ~ 669476 (-) False XLOC_008887
TCONS_00017537 other downstream 175091 425695 ~ 425756 (-) True XLOC_008873
TCONS_00017535 other downstream 251280 349451 ~ 349567 (-) True XLOC_008870
TCONS_00017597 other upstream 720431 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017627 other upstream 1233612 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017639 other upstream 1664610 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017647 other upstream 2023669 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017655 other upstream 2135024 2736383 ~ 2736498 (-) True XLOC_008940

Expression Profile

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