RNA id: TCONS_00017545



Basic Information


Item Value
RNA id TCONS_00017545
length 893
RNA type mRNA
GC content 0.57
exon number 5
gene id XLOC_008881
representative False

Chromosome Information


Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 556956 ~ 568645 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


ACTCCGCTCCTCTGCTCCTGATCACAGGCGGTGTTGTTCTGCAGTGTGAGGATGAAGACTCTTGTGTGTGTCTGGATGATGATCTGTCTCTGCTGCTGTGCTGAAGCCGCGGCCTCTGACCTCCTGCGGGACAGTGCTGTGAGCTGGCTGGGAGCTCTGCCGTGCGGCAGCTGGGACTGTGAGTGTGCGTTCAGTAAACTGCAGGGCTGCTGCTGTGTCTCCAGCGCTCTGGATGATCTGGAGCAGGCCACCTTCATCCGCATGATGGGCTTATGGGACGGCCTGATGCGCCTCAACACACAAGTCCAGGACATCACAGCTGGCTGTAAGATAGCCTTCACCGCTGCCATGCTGCCCATGAGTGGGTGTTTCGGGCCTTTCACCAGCAACATGTCCATCTCTTACCAGTCTGTCTCGCTCAATCAGGGGAACGGCTACAATCCTGCGCTGGGCGTGTTCACGGCACCCCACGCAGGCCTGTACTCCTTCTCCTTCACGGTGTACTCCAAACCGGGCAGCTCCGGCGAGCGGCTGTACCAGAAGCTGCAGCTGGTGAAGGATGGGACGGTGCTGGCCTCGTCCTGGGAGGATAACCGTGAGGACTCGGAGGACAGCAGCTCTCAGACGCTCCTGCTGCAGCTCAGACGGGGCTGTCAGGTCTACATGGAGCTGCTGTCCGGACGGCAGATCTGCGGAGACACACAGGGCCTCAACACCTTCAGCGGATTCCTCATCTACCCCTCCTCTGATGAGCTGGgcaactaacacacacacacacacacacacacacacacacacacatacagtacagtgcaAAAGTCTTAATCCACTACCAGCTCTGGGAGATTAAAGCTATGGAGCAGGTGCAGGGTCAATACTTTTGGCTGAATTAT

Function


GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-111109-3 No description available

Ensembl:

ensembl_id ENSDART00000156744

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00019096 lncRNA downstream 120426 434443 ~ 436530 (-) False XLOC_008875
TCONS_00019097 lncRNA downstream 120426 434462 ~ 436530 (-) True XLOC_008875
TCONS_00019095 lncRNA downstream 120513 434096 ~ 436443 (-) False XLOC_008875
TCONS_00018808 lncRNA downstream 127309 428419 ~ 429647 (-) True XLOC_008874
TCONS_00019094 lncRNA downstream 178769 374380 ~ 378187 (-) True XLOC_008871
TCONS_00017552 lncRNA upstream 23949 592594 ~ 595263 (-) False XLOC_008883
TCONS_00017553 lncRNA upstream 32202 600847 ~ 601359 (-) True XLOC_008883
TCONS_00019098 lncRNA upstream 54064 622709 ~ 633408 (-) True XLOC_008885
TCONS_00019099 lncRNA upstream 156771 725416 ~ 727742 (-) False XLOC_008890
TCONS_00019100 lncRNA upstream 244451 813096 ~ 815019 (-) True XLOC_008893
TCONS_00017544 mRNA downstream 5775 543746 ~ 551181 (-) True XLOC_008880
TCONS_00017543 mRNA downstream 5779 543744 ~ 551177 (-) False XLOC_008880
TCONS_00017542 mRNA downstream 50946 499848 ~ 506010 (-) True XLOC_008879
TCONS_00017541 mRNA downstream 79733 464229 ~ 477223 (-) True XLOC_008878
TCONS_00017540 mRNA downstream 94173 454349 ~ 462783 (-) True XLOC_008877
TCONS_00017547 mRNA upstream 3550 572195 ~ 576135 (-) True XLOC_008882
TCONS_00017548 mRNA upstream 17960 586605 ~ 591308 (-) False XLOC_008883
TCONS_00017549 mRNA upstream 18362 587007 ~ 590787 (-) False XLOC_008883
TCONS_00017550 mRNA upstream 22025 590670 ~ 601971 (-) False XLOC_008883
TCONS_00017551 mRNA upstream 23608 592253 ~ 604353 (-) False XLOC_008883
TCONS_00017537 other downstream 131200 425695 ~ 425756 (-) True XLOC_008873
TCONS_00017535 other downstream 207389 349451 ~ 349567 (-) True XLOC_008870
TCONS_00017597 other upstream 753145 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017627 other upstream 1266326 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017639 other upstream 1697324 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017647 other upstream 2056383 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017655 other upstream 2167738 2736383 ~ 2736498 (-) True XLOC_008940

Expression Profile


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