RNA id: TCONS_00017536


Basic Information

Item Value
RNA id TCONS_00017536
length 1385
RNA type mRNA
GC content 0.54
exon number 5
gene id XLOC_008872
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 413543 ~ 419597 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCtctccggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgcaggcttTCGATGCTGACCGAGGCTCAGACCCGGGATCTGCTGCGGCGGGCGGACGCGGTGTGCTTTGATGTGGACAGCACCGTGATCCGGGAGGAGGGCATCGACGAGCTCGCCAAATTCTGCGGAGTCGGGGACGCGGTCACGGAGATgacccGTAAGGCGATGGGCGGCTCTATGTCATTTCAGACGGCACTCAGTGAGCGTCTGTCCATCATCGAGTGCTCGAGGGAACAAGTCAGCAAGCTGATCACAGACAACCCTCCTCAGCTGACACCCGGCATCAGGGAGCTGGTCCAGAAGCTGCAGCAGCGCGGTGTGCAGGTGTTCCTGGTGTCGGGGGGTTTCCGCTGTATCGTGGAGCACGTGGCGTCGCAGCTCTCCATCCCGCTGCAGCACGTCTACGCCAACAGGCTCAAGTTCTACTTCAATGgagagTACGCCGGCTTCGATGAGTCCCAGCCCACGGCTCAGAGCGGAGGGAAGGGCCGAGTGATCAGCATGCTGAAGGAGAAGCACGGCTTCCAGAACATCCTGATGATTGGAGACGGAGCCACAGACCTGGAGGCCTGCCCACCGGCTAGCGCCTTCATCGGGTTCGGAGGGAATGTGCTGCGCCCGCAGGTGAAGGAGAAGAGCTCATGGTACGTCAGCAGCTTCTCTGAGCTCAGTAAAGAACTGGACaagatctgaacacacacacacacacacacacacacacacacacacacacaccgtgccTTTACTAGCCTCAGTAACACACACTTTTAATCCTCACGTGTTTTAGTTTCTCAGGATGCTGTATGTAATAAACGCAGCAGCACACGGAGCTGATTTTAATATGGAGATGTTGTTTATTGATTAACAGATGAGCGGCGTAAtgtagagtgtgtgtgcatgcggccgtctcacacacacacatacagaaaacATCATCAATAATCAGAGCAGAATCATATCAAACACACATCTATGTAGAACACAAGAGAAATCCAATGCAGTAACTGTAAAGCAGACGTCTGCAGCGCGGCTCATCTGACCTCAGATCTGTGTGGTGTACATGTACAGCtaataaatatgcaataaataCAGACTGACGGCTGCCGGCGGTGTTCGAGAGCGCTCCGTCATGTTCTCCTCCTCTAAACCGTGCAGCTGAACTTTATTTGACTGATGAGTGGCTGTGTTTGTCCTGTCTGCAGCGTcagctgtgcgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgttgatccgAATGATCTCGGCAGTGGAGGGTCTGCTGTCTGTCTTCATCTGACGGGGACGCAgcagcgctgtgtgtgtgtgtgt

Function

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0006564 L-serine biosynthetic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0016791 phosphatase activity molecular_function
GO:0004647 phosphoserine phosphatase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
ko00680 Methane metabolism
ko00260 Glycine, serine and threonine metabolism
ko01009 Protein phosphatases and associated proteins

ZFIN:

id description
ZDB-GENE-050809-127 Predicted to enable magnesium ion binding activity and phosphoserine phosphatase activity. Predicted to be involved in L-serine biosynthetic process and dephosphorylation. Predicted to act upstream of or within cellular amino acid biosynthetic process. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in PSPH deficiency. Orthologous to human PSPH (phosphoserine phosphatase).

Ensembl:

ensembl_id ENSDART00000058993

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019094 lncRNA downstream 35356 374380 ~ 378187 (-) True XLOC_008871
TCONS_00018807 lncRNA downstream 35577 374380 ~ 377966 (-) False XLOC_008871
TCONS_00017534 lncRNA downstream 123036 282731 ~ 290507 (-) True XLOC_008869
TCONS_00017533 lncRNA downstream 123966 282731 ~ 289577 (-) False XLOC_008869
TCONS_00017532 lncRNA downstream 123966 282731 ~ 289577 (-) False XLOC_008869
TCONS_00018808 lncRNA upstream 8822 428419 ~ 429647 (-) True XLOC_008874
TCONS_00019095 lncRNA upstream 14499 434096 ~ 436443 (-) False XLOC_008875
TCONS_00019096 lncRNA upstream 14846 434443 ~ 436530 (-) False XLOC_008875
TCONS_00019097 lncRNA upstream 14865 434462 ~ 436530 (-) True XLOC_008875
TCONS_00017552 lncRNA upstream 172997 592594 ~ 595263 (-) False XLOC_008883
TCONS_00017531 mRNA downstream 160730 168002 ~ 252813 (-) True XLOC_008867
TCONS_00017530 mRNA downstream 249957 119057 ~ 163586 (-) True XLOC_008866
TCONS_00017529 mRNA downstream 305129 105955 ~ 108414 (-) True XLOC_008865
TCONS_00017527 mRNA downstream 305643 102925 ~ 107900 (-) False XLOC_008865
TCONS_00017528 mRNA downstream 306854 105955 ~ 106689 (-) False XLOC_008865
TCONS_00017538 mRNA upstream 13438 433035 ~ 434503 (-) False XLOC_008875
TCONS_00017539 mRNA upstream 29500 449097 ~ 452347 (-) True XLOC_008876
TCONS_00017540 mRNA upstream 34752 454349 ~ 462783 (-) True XLOC_008877
TCONS_00017541 mRNA upstream 44632 464229 ~ 477223 (-) True XLOC_008878
TCONS_00017542 mRNA upstream 80251 499848 ~ 506010 (-) True XLOC_008879
TCONS_00017535 other downstream 63976 349451 ~ 349567 (-) True XLOC_008870
TCONS_00017537 other upstream 6098 425695 ~ 425756 (-) True XLOC_008873
TCONS_00017597 other upstream 902193 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017627 other upstream 1415374 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017639 other upstream 1846372 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017647 other upstream 2205431 2625028 ~ 2625663 (-) True XLOC_008933

Expression Profile

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