RNA id: TCONS_00017534


Basic Information

Item Value
RNA id TCONS_00017534
length 1114
lncRNA type lincRNA
GC content 0.52
exon number 10
gene id XLOC_008869
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 282731 ~ 290507 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGTGGGCTCTTTAGGGGTCTCTGCTGCACAGGCCAAAGCTGCTAAATATGGTAAATATGGtattaaattaaatcacaaaCCCAATATATCGGTCAGACAGGGACATTAGGATGTTTGGTAATGGTTCACTTCATATTTCTGCAGGTGCTGGTGCTGGTTTAGGTGGAGCTGGAGCCTTTCCTGGTGGTGTTGGTGCTGGTTTAGGTGGAGCTGGAGCCTTTCCTGGTGGTGCTGGTGGATTTTACCCTGGCGCAGTAGGTACAGGTGGTCTTACACCAGCACAAGCTAAGGCAGCTAAATATGGTGCTGTCCCTGGTGCTACTGGGATTGGTGGCCTACCAGGTGCAGGTGGACTGTTTCCTGGGCCAGGAGTAGGAGGTGAGATACAAATCAGTGCCATTAGAGCTGACAGTAAGTTTATTAGAATGATATAATAGTgctaaatgttgttgttgttgttgtttacctgtGTGTGAAGGTGCTGGTGCACTCTCCCCCGCTCAGGCAAAAGCTGCTAAATATGGTGCAGGAGCAGTTCCTGGTGGTGCCGGGATTCTTCCTGGTGGTGCCGGGATTCTTCCTGGTGGTGCTGGGATTGGGCCAGGAGGAGTTTACCCTGGAACAGGAGGTGCTGGTGCACTCTCCCCTGCTCAGGCAAAAGCTGCTAAATATGGTGCAGGAGCAGTTCCTGGTGGGGCTGGGGTTCTTCCTGGTGGTGCCGGTATTGTTCCAGGTAGGACTGGGATTGTTCCTGCTGGACCTGGGATTGTTCCAGGAGCTGGGGGAGTCTACCCTGCAACAGGAGGTCTTACACCAGCTCAAGCCAAAGCAGCTAAATACGGTCTAGGTGCGGCAGGTGGAGCTGGTGCTGTTCCGGGTGTTGGAGGACTGTACCCTGGAGCAGGGGGAGCTGGAGTTGCCCCAGGCTATGGTTCTGTGGCTGGGCTTGGAGGACAGCTTGGGGCTGGAGGGCTAGCAGCTGGAGCCAAACCTCCTAAATATGGTAAGGGCTTGACTCTTTTCTGTTTCAGCTGTCTTGGCAGTGTTATTCAGCTGTTTGTACATGTGTTGCTCTACAGTTTGTGTTTGAATGTTGTTTGTAATAGAAAATAG

Function

GO:

id name namespace
GO:0051180 vitamin transport biological_process
GO:0005576 extracellular region cellular_component
GO:0008131 primary amine oxidase activity molecular_function
GO:0004304 estrone sulfotransferase activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000194279

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018806 lncRNA downstream 21918 255285 ~ 260813 (-) True XLOC_008868
TCONS_00019093 lncRNA downstream 193492 84837 ~ 89239 (-) True XLOC_008863
TCONS_00019092 lncRNA downstream 198516 81571 ~ 84215 (-) True XLOC_008862
TCONS_00018807 lncRNA upstream 83873 374380 ~ 377966 (-) False XLOC_008871
TCONS_00019094 lncRNA upstream 83873 374380 ~ 378187 (-) True XLOC_008871
TCONS_00018808 lncRNA upstream 137912 428419 ~ 429647 (-) True XLOC_008874
TCONS_00019095 lncRNA upstream 143589 434096 ~ 436443 (-) False XLOC_008875
TCONS_00019096 lncRNA upstream 143936 434443 ~ 436530 (-) False XLOC_008875
TCONS_00017531 mRNA downstream 29918 168002 ~ 252813 (-) True XLOC_008867
TCONS_00017530 mRNA downstream 119145 119057 ~ 163586 (-) True XLOC_008866
TCONS_00017529 mRNA downstream 174317 105955 ~ 108414 (-) True XLOC_008865
TCONS_00017527 mRNA downstream 174831 102925 ~ 107900 (-) False XLOC_008865
TCONS_00017536 mRNA upstream 123036 413543 ~ 419597 (-) True XLOC_008872
TCONS_00017538 mRNA upstream 142528 433035 ~ 434503 (-) False XLOC_008875
TCONS_00017539 mRNA upstream 158590 449097 ~ 452347 (-) True XLOC_008876
TCONS_00017540 mRNA upstream 163842 454349 ~ 462783 (-) True XLOC_008877
TCONS_00017541 mRNA upstream 173722 464229 ~ 477223 (-) True XLOC_008878
TCONS_00017535 other upstream 58944 349451 ~ 349567 (-) True XLOC_008870
TCONS_00017537 other upstream 135188 425695 ~ 425756 (-) True XLOC_008873
TCONS_00017597 other upstream 1031283 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017627 other upstream 1544464 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017639 other upstream 1975462 2265969 ~ 2266083 (-) True XLOC_008927

Expression Profile

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