RNA id: TCONS_00019092


Basic Information

Item Value
RNA id TCONS_00019092
length 2194
lncRNA type antisense_over
GC content 0.50
exon number 2
gene id XLOC_008862
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 81571 ~ 84215 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCGCTGCTATCTCACACTCAgctctgaccacacacacacacacacacacacacagtaaccaGAAGACAAGTCTGCGGTGCAGCAGGATCTGTGTTTGTGTCCTCATGAGGAACTGCATTTCTGATTACAGAGGAGTTTCAGTACTGACTTAGACCACTCACGTgtccacagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttctcaccaCTGGAGAGTCTCCCAGTCTGGAGTACAGCAGGTAACTGTGCAGATCTCCATGCTTCATGTAGGGCAGGATGACCACCGGAGACGGGTAACCTTCACTCTCCACAGTCTGCAGACACACACCTgccagacatgcacacacacacacgcacacacacacgcacacacgcacgcacgcacgcatgcacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaccagattaACCCTTACACACACTCCTCAGCTGGGCTAACAGCATGTACGGGCTGATGGTTAAACAGACGTTGACATCTCCTGTCCATCACACTGCTGCTCAGTTCCGTGTTTCCACTGTCGTGCTAAAGCGAGCGAGTCATGGCCAGTCAGTTTCACCGTCACTTTTGGGGCCTGAttgggccaaagcggggcttcgTCAGGACCAGCCGCCGGCCTTTTCAGCCCACCCAATACTTTAGGCCAAAgagcggagtgaaaggagaggcggagtTTGCCTGAGTCTGGTAAAGACGGTGAGCCGCCATGACACTAGTTTTCAGATCAcacacacgagtacatgcggaaacaaatcaataaatacagGACAGAGAACATCCAGCTGCTCAGTTCAACATGTTCCACAAACACCTTATAGGCTGGCCTCTTCTGCTTATGATCGCCCTCATGCGTCCCTCTTAAATGTAAAGCGGTTGCAGAAACACTACAGCAGTGTTCATTTAACAAGTGACATGCCAATATCTCAATAACCCATAATAATCCTTACACCACATTAAACACACAGCAGCCAGGAACAGCAGATCACAAGAGTTTATTCAAGTGTGTGCATGAAATATCTGCGTTTAGATGcgcacgtgtgtgtttgtgtgtgtgtgtgtgtttgtgcgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtttgtgtgtgtgcgtgtgtgtgtgtgtgttgtagcaGTGGACACACACTCACCCAGGAGCCTCATGACGTTCTGGTGGTCAAACTCCTTCATACAGGCCGCTTCTCTGAGGAAATCCTCCATCTCTGTGCGGGTGCAGATGGCGACTGTAGAGCGGAGGATCAGGTTagtcacacgcacgcacgcacacatgcacatatatagatatatatctcCATCAGAGATGAACATCACTCACTTTTCATGGTCTTTACTGCCACCTTCAGCACCGAGTCCTCCTGAGAGAGAGAACCCTCCATCACAGAGCCAAActcacctgaacacacacacacacagaacattaAGCAtctgaatgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactgcgcatgGGTCAGTGCTCACCCTCTCCCAGTGTTTTTCCCAGGGTCAGTCTGTGTCTGTCCACCATCACATCCTGCAGCTTCTGCTTCAGCTCATCACTGATGCCCAGAGAGTTCACTGAGGAGACAACACACACCTTCAACaccacaataacacacacacacacacacactagtatgCTGGAGTGAGAATACAGCTATATACTGAGAGTAAAGCTCCAGTGAGGAGCACATGATGTTAGAATTGACGCAGGAGTGTTTTGCTCTACAAATGAACCCAGATGTGAGTGCAGGAATGCAGATGGAGCTCGTCCAGATGACGTAAACCCTCCACCCTGGAGTACTGCTGAACACAGGCCATCGAGAGCGTCTCAATCTGCACAACCTGGAGATCATGAGCGAAATCTGATCCACACAACACAGAGAGACTCAAAACTCTGAACAACACGTCTCATTTACTGTCAGCTCagtctcacagcactgaacATCAGAGAAACACTGAACAACATCAGAGAAACACTGAACAACATC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019093 lncRNA upstream 622 84837 ~ 89239 (-) True XLOC_008863
TCONS_00018806 lncRNA upstream 171070 255285 ~ 260813 (-) True XLOC_008868
TCONS_00017533 lncRNA upstream 198516 282731 ~ 289577 (-) False XLOC_008869
TCONS_00017532 lncRNA upstream 198516 282731 ~ 289577 (-) False XLOC_008869
TCONS_00017534 lncRNA upstream 198516 282731 ~ 290507 (-) True XLOC_008869
TCONS_00017525 mRNA downstream 49420 26042 ~ 32151 (-) True XLOC_008860
TCONS_00017523 mRNA downstream 49440 16175 ~ 32131 (-) False XLOC_008860
TCONS_00017526 mRNA upstream 8916 93131 ~ 97205 (-) True XLOC_008864
TCONS_00017527 mRNA upstream 18710 102925 ~ 107900 (-) False XLOC_008865
TCONS_00017528 mRNA upstream 21740 105955 ~ 106689 (-) False XLOC_008865
TCONS_00017529 mRNA upstream 21740 105955 ~ 108414 (-) True XLOC_008865
TCONS_00017530 mRNA upstream 34842 119057 ~ 163586 (-) True XLOC_008866
TCONS_00017535 other upstream 265236 349451 ~ 349567 (-) True XLOC_008870
TCONS_00017537 other upstream 341480 425695 ~ 425756 (-) True XLOC_008873
TCONS_00017597 other upstream 1237575 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017627 other upstream 1750756 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017639 other upstream 2181754 2265969 ~ 2266083 (-) True XLOC_008927

Expression Profile

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