RNA id: TCONS_00017526


Basic Information

Item Value
RNA id TCONS_00017526
length 663
RNA type mRNA
GC content 0.63
exon number 4
gene id XLOC_008864
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 93131 ~ 97205 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCGCGCGGCGCGTCTGCTTCTGCTGTGCGGAGTCGCGGTGTGTGTCGCGCGGCTCTGCGCTTCCTCGGGCCCGGCGCTGCTCCGCGTTCCGCTACGCCAAGGGCCCTTGACCCCCCACAGCACCCCCGCGGCCCACAGGAGCCCCCACAGTCCCCGCGTGCGCTCCCGCAGAGCCACTTCCGGAATCAGCTTTATCAACATGATCGACAACCTGCGCGGGAAATCCGGACAGGGCTATTACATAGAGATGGCGGTGGGGAGTCCTGCGCAGAGGctCAACATCTTGGTTGATACGGGCAGCAGTAACTTTGCCGTGGGGGCTGCAGCTCATCCATTCCTGCACCGATATTACCACCGCTCACTctcctCCTCCTACAGGGATCTCGGTCGGGGTGTGTATGTGCCGTACACTCAGGGCCGCTGGGAGGGTGAGCTGGGCACTGATGTGGTGTCAGTCCCCTGCGGCCCCAACGTCTCCCTAAGGGCCAACATCGCCGCCATCACCCAATCAGATCGCTTCTTTATCAATGGCTCCAATTGGGAGGGCATCCTGGGCCTGGCCTATGCAGAGATTGCACGGCCGGATGAGACTCTGGAGCCGTTCTTTGACTCTCTGCTGCGGCAGAGCACTGTGGCGGATGTGTTCTCTCTGCCGCTCTGC

Function

GO:

id name namespace
GO:0031643 positive regulation of myelination biological_process
GO:0006508 proteolysis biological_process
GO:0022011 myelination in peripheral nervous system biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004190 aspartic-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function

KEGG:

id description
ko05010 Alzheimer disease
ko01002 Peptidases and inhibitors

ZFIN:

id description
ZDB-GENE-040426-1835 Predicted to enable aspartic-type endopeptidase activity. Acts upstream of or within myelination in peripheral nervous system and positive regulation of myelination. Predicted to be located in several cellular components, including endosome; lysosome; and membrane raft. Predicted to be integral component of membrane. Is expressed in brain. Human ortholog(s) of this gene implicated in Alzheimer's disease. Orthologous to human BACE1 (beta-secretase 1).

Ensembl:

ensembl_id ENSDART00000158734

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019093 lncRNA downstream 3892 84837 ~ 89239 (-) True XLOC_008863
TCONS_00019092 lncRNA downstream 8916 81571 ~ 84215 (-) True XLOC_008862
TCONS_00018806 lncRNA upstream 158080 255285 ~ 260813 (-) True XLOC_008868
TCONS_00017533 lncRNA upstream 185526 282731 ~ 289577 (-) False XLOC_008869
TCONS_00017532 lncRNA upstream 185526 282731 ~ 289577 (-) False XLOC_008869
TCONS_00017534 lncRNA upstream 185526 282731 ~ 290507 (-) True XLOC_008869
TCONS_00018807 lncRNA upstream 277175 374380 ~ 377966 (-) False XLOC_008871
TCONS_00017525 mRNA downstream 60980 26042 ~ 32151 (-) True XLOC_008860
TCONS_00017523 mRNA downstream 61000 16175 ~ 32131 (-) False XLOC_008860
TCONS_00017527 mRNA upstream 5720 102925 ~ 107900 (-) False XLOC_008865
TCONS_00017528 mRNA upstream 8750 105955 ~ 106689 (-) False XLOC_008865
TCONS_00017529 mRNA upstream 8750 105955 ~ 108414 (-) True XLOC_008865
TCONS_00017530 mRNA upstream 21852 119057 ~ 163586 (-) True XLOC_008866
TCONS_00017531 mRNA upstream 70797 168002 ~ 252813 (-) True XLOC_008867
TCONS_00017535 other upstream 252246 349451 ~ 349567 (-) True XLOC_008870
TCONS_00017537 other upstream 328490 425695 ~ 425756 (-) True XLOC_008873
TCONS_00017597 other upstream 1224585 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017627 other upstream 1737766 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017639 other upstream 2168764 2265969 ~ 2266083 (-) True XLOC_008927

Expression Profile

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