RNA id: TCONS_00017523


Basic Information

Item Value
RNA id TCONS_00017523
length 1476
RNA type mRNA
GC content 0.47
exon number 9
gene id XLOC_008860
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 16175 ~ 32151 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGAGCTCTCAAGCTCACTACTGCTGGTTTTGGTCTTGACTGTGTTGATGTTGATCAGATGGAGGAGGAAGGAGAACGGACTTTCTTTGCCCCCGGGGCCACTGGCACTGCCACTGATCGGAAACTTACTAACACTGGACAAAAGTGCCCCATTTAAGAGCTTTATGAAGTGGAGAAAAACCTATGGGTCTGTGATGACGGTGCACCTCGGGCCTCAGAGAATGGTGGTACTGGTGGGTTACGAAACAGTGAAGGAAGCTCTGGTGGACCAGGCTGACGACTTTGCACCCAGGGCTCCCATTCCCTTTATGAACAGAATTGTGAAGGGCTACGGTCTGGCCATCAGCAATGGTGAACGCTGGCGTCAACTGAGGCGGTTCACGCTCACCACACTGAGGGATTTTGGAATGGGACGCAAACGAATGGAGCAGTGGATTCAAGAAGAGAGCAGATACTTGCTCAAGAGTTTTGAAGAAACCAAATCCAAACCAGTTGATCCAACATTCTTCTTTAGTCGGACTGTGTCCAACGTCATCTGCTCTCTGGTGTTTGGGCAGCGCTTTGATTATGAAGACAAAAACTTCCTGCAGTTGCTCCAGATCATCTCCAAACTACTGCGATTTTTAAGCAGCCCTTGGGGACAGCTCTACAACATCTTCCCCCAAGTAATGGAAAGCTTTTCTAGTAGACATCACGCCATCTTAAAAGACGTAGAAAACATCCGGACCTTCATTAGGAACAAAGTTAAGGAACATGAACAGAGATTAGACTTCAGTGACCCAAGTGATTTTATTGACTGCTTCCTTATCAGACTCACTCAGGAAAAAGACAAGCTTGACACAGAATTTCACAAAGATAACTTGATGGCGACAGTTTTAAACCTGTTCGTAGCTGGTACAGAGACCACCAGCACAACTCTGAGATATGCCCTGATGCTGTTGATCAAACACCCCCAAATACAGGaGCAAATGCAGAGGGAGATAGATCGCGTTATTGGACAGAACAGAATTCCTACAATGGAGGACAGAAAGTCTCTCCCCTTCACTGATGCTGTGATTCATGAAGTGCAGCGCTATATGGACATTGTGCCTCTAAGTCTTCCCCACTATGCCATGAAAGACATCACTTTCAGAGGCTATAAAATCCCCAAGGACACAGTAATTATTCCCATGCTGCACTCTGTCCTAAGGGATGAGGGACATTGGGAAACCCCTTGGACATTTAACCCAGAGCACTTTCTGGACTCCAATGGCAACTTTAAGAAGAATCCAGCCTTTATGCCCTTTTCTGCAGGTAAACGTGTGTGTGTCGGTGAGTCTCTGGCTCGTATGGAGATCTTTCTGTTTATCGTGTCTCTGCTTCAGAAGTTCAGCTTCAGTAGTCCTAATGGTCCAGACAGTATAGACCCCAGTCCTGAACTCAGCAGCTTTGGCAACATGCCTCGACTCTATGAACTCATAGCATCCCCTCGCTGA

Function

GO:

id name namespace
GO:0042738 exogenous drug catabolic process biological_process
GO:0006082 organic acid metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0006805 xenobiotic metabolic process biological_process
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008395 steroid hydroxylase activity molecular_function
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-490 Predicted to enable heme binding activity; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen; and steroid hydroxylase activity. Predicted to be involved in exogenous drug catabolic process; organic acid metabolic process; and xenobiotic metabolic process. Predicted to be active in cytoplasm and intracellular membrane-bounded organelle. Is expressed in several structures, including EVL; pectoral fin musculature; periderm; visual system; and yolk syncytial layer.

Ensembl:

ensembl_id ENSDART00000099074

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019092 lncRNA upstream 49440 81571 ~ 84215 (-) True XLOC_008862
TCONS_00019093 lncRNA upstream 52706 84837 ~ 89239 (-) True XLOC_008863
TCONS_00018806 lncRNA upstream 223154 255285 ~ 260813 (-) True XLOC_008868
TCONS_00017533 lncRNA upstream 250600 282731 ~ 289577 (-) False XLOC_008869
TCONS_00017532 lncRNA upstream 250600 282731 ~ 289577 (-) False XLOC_008869
TCONS_00017526 mRNA upstream 61000 93131 ~ 97205 (-) True XLOC_008864
TCONS_00017527 mRNA upstream 70794 102925 ~ 107900 (-) False XLOC_008865
TCONS_00017528 mRNA upstream 73824 105955 ~ 106689 (-) False XLOC_008865
TCONS_00017529 mRNA upstream 73824 105955 ~ 108414 (-) True XLOC_008865
TCONS_00017530 mRNA upstream 86926 119057 ~ 163586 (-) True XLOC_008866
TCONS_00017535 other upstream 317320 349451 ~ 349567 (-) True XLOC_008870
TCONS_00017537 other upstream 393564 425695 ~ 425756 (-) True XLOC_008873
TCONS_00017597 other upstream 1289659 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017627 other upstream 1802840 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017639 other upstream 2233838 2265969 ~ 2266083 (-) True XLOC_008927

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000092_03750015_03753913.mRNA True 2311 mRNA 0.42 9 CI01000092 3749240 ~ 3753976 (-)